PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G029500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 343aa    MW: 37308 Da    PI: 6.6727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G029500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30159217259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++ Y+geHnh+
  Manes.05G029500.1.p 159 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVSYTGEHNHP 217
                          79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.911153219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-30153219IPR003657WRKY domain
SuperFamilySSF1182902.88E-26156219IPR003657WRKY domain
SMARTSM007745.3E-37158218IPR003657WRKY domain
PfamPF031062.1E-25160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDDWDLHAV VRGCTTTSYA SSSSTAAASI TTSDSASSFT RPDFCFSSSS SSFASEPPGP  60
LFSLPDPFET RNGIGELHEL YKPFFPRSHQ TLYSPQPQPA PISPLSSLSV SKEQTQIKQP  120
KQSHAASLTS TANSHAPRSK RRKNQLKKIC HVPAESLSSD VWAWRKYGQK PIKGSPYPRG  180
YYRCSSSKGC LARKQVERNR SDPGMFIVSY TGEHNHPAPS HRNSLAGSTR QKTTTPQTVT  240
SSDSNKPSPA AKPTCSSPAT SMDDELLPQI TNTESREEKD TMEDEEEDEF GGFSDMTASD  300
DFFSGLDELD DPVTRDRFSG HFPLNLGLPW LAKNAATAAG GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-21143220280Disease resistance protein RRS1
5w3x_D6e-21143220280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G029500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276180.0KT827618.1 Manihot esculenta WRKY transcription factor 43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613059.10.0WRKY transcription factor 22-like
TrEMBLA0A140H8P70.0A0A140H8P7_MANES; WRKY transcription factor 43
STRINGcassava4.1_027012m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-74WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]