PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G044600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 202aa    MW: 22244.3 Da    PI: 8.8264
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G044600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.2e-39101101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC k+C++apyf ++q +++fa+vh++FGasn +kll ++p ++r da+ +l yeA ar+rdPvyG+vg++++lqqq+ +
  Manes.05G044600.1.p  10 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPAHKRLDAVVTLSYEALARVRDPVYGCVGHLFTLQQQVVN 99 
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+aela+++++
  Manes.05G044600.1.p 100 LQAELAYIQAR 110
                          ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2069111IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3710108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSGASNGGGP CGACKFLRRK CLKGCIFAPY FDSDQGTAHF AAVHRVFGAS NASKLLLRIP  60
AHKRLDAVVT LSYEALARVR DPVYGCVGHL FTLQQQVVNL QAELAYIQAR LSTLQRLPLQ  120
QEAPPLPVQS SSQSSRVSNS EMASNWNVSM HFDQLQQVPS EWTSLCNPLD QELENDNLQA  180
LARDFVRRYL PGVRFKPPSS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3861047104LOB family transfactor Ramosa2.1
5ly0_B7e-3861047104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G044600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613261.11e-148LOB domain-containing protein 19
SwissprotO813223e-71LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2C9VVF51e-147A0A2C9VVF5_MANES; Uncharacterized protein
STRINGcassava4.1_016575m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-71LOB domain-containing protein 31