PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G048700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 717aa    MW: 78145.2 Da    PI: 5.3586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G048700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.11.1e-983607155374
                 GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + ++Ae ++sg+  laq +Larl+++ + + g+p  R+a+yf+eAL+  l+       ++  ps+ s  + ++++ a+k fse+sPil+f
  Manes.05G048700.1.p 360 ICQAAELIESGNPVLAQGILARLNHQlSLSIGKPHIRAAFYFKEALQLLLHM-----NNTTIPSSVSACSLISKIGAYKSFSEISPILQF 444
                          689**********************9455667*****************998.....3333444444456899***************** PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                          +++t+Nqa+lea eg +r+HiiDfdi+ G+QW++L+q+La R++g psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pfe ++l  
  Manes.05G048700.1.p 445 ANFTCNQALLEACEGFDRIHIIDFDIGFGGQWASLMQELAMRNGGVPSLKITAFASPSSHDEVELGFTQENLRIFASEINMPFEVEILGL 534
                          ***************************************************************************************966 PP

                 GRAS 184 krledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +++++   ++L ++   +E++aVnl +  ++ +  + s     +  L++vk+lsPkvvv  ++ +d+++ +F++++ ++++ ys+l++sl
  Manes.05G048700.1.p 535 ESINSG-SWSLPFRAseKEVIAVNLPIGPFSNY--PSS----LPVALRFVKQLSPKVVVSLDKGCDRTDLPFAHQVNHSIQSYSSLLESL 617
                          655555.6777555555**********888887..444....4559******************************************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          ea    + +  +k+Er l+++ i+n+v  ++++      +  +Wr+ + + GF+p ++s++a++qa++l+++++++g++ve+++ slvl+
  Manes.05G048700.1.p 618 EAV-NMNLDVLQKIERSLVQPGIENIVLGRHRH----PDRTPTWRSLFLQTGFTPFQFSNFAESQAECLVQRTPVRGFNVEKRQSSLVLC 702
                          776.4566999*****************99998....88999************************************************ PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          W++++L+s+SaWr
  Manes.05G048700.1.p 703 WQGKELISASAWR 715
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.912330695IPR005202Transcription factor GRAS
PfamPF035144.0E-96360715IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MKAMPLPFDD FQGKGVLDFS SSSSSSLDSF SQLPPQNQQQ QQQKWQNNNA KENYCYVGSE  60
PTSVLEARRS PSPPTSSSTL SSSQGGSNGG GGGASTETTT GVAAAVSGFP SGDISTEKCG  120
QLGMEDWEGV LPGSPSQEQS ILRLIMGDVE DPSLGLNKLL QSGSGSQEME FNAGFGVVDQ  180
GFGFEPMNSS SLVNNIDPSV HGTSSEFPLL SHNAKNGSVL SQNPNPVIPT SAGNLLLGMF  240
QHGEEKPQIF NPQVTTNQNP AQFGENPAMF LPLSYAQLQE HQLLSAPPAK RLNSGPFGAN  300
YQVPKVPFSD SKPDLFLQRQ QQQQHQIQML QQQRPAMMKQ KIMTDELAVQ QLQQAILNPI  360
CQAAELIESG NPVLAQGILA RLNHQLSLSI GKPHIRAAFY FKEALQLLLH MNNTTIPSSV  420
SACSLISKIG AYKSFSEISP ILQFANFTCN QALLEACEGF DRIHIIDFDI GFGGQWASLM  480
QELAMRNGGV PSLKITAFAS PSSHDEVELG FTQENLRIFA SEINMPFEVE ILGLESINSG  540
SWSLPFRASE KEVIAVNLPI GPFSNYPSSL PVALRFVKQL SPKVVVSLDK GCDRTDLPFA  600
HQVNHSIQSY SSLLESLEAV NMNLDVLQKI ERSLVQPGIE NIVLGRHRHP DRTPTWRSLF  660
LQTGFTPFQF SNFAESQAEC LVQRTPVRGF NVEKRQSSLV LCWQGKELIS ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3037171518375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G048700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612745.10.0scarecrow-like protein 6
SwissprotO813161e-143SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2C9VTD40.0A0A2C9VTD4_MANES; Uncharacterized protein
STRINGcassava4.1_034057m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-130GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]