PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G052000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 245aa    MW: 27100.9 Da    PI: 5.6544
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G052000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1875124255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a++ ++g
  Manes.05G052000.1.p  75 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALTIKG 124
                          69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3775138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3275133IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2175133IPR016177DNA-binding domain
PfamPF008479.7E-1375124IPR001471AP2/ERF domain
PROSITE profilePS5103223.27575132IPR001471AP2/ERF domain
PRINTSPR003671.9E-107687IPR001471AP2/ERF domain
CDDcd000181.43E-3276134No hitNo description
PRINTSPR003671.9E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEKHINVEID AHDNFLPSSS SSSSSSSSFS SSSSSSSKTF SGSKTKENHA APMKAQDESQ  60
KKQKTNNENG NKHPTYRGVR MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL  120
TIKGSSAYLN FPELAHELPR PITKSPKDIQ VAAAKAATLA FPERMQCQAE AENISESDNL  180
ALDNTQESTC SPSADPDDTL FDLPDLFIDG VDLRNGFCQY SSSWQLCAAD TGFRLEEPYL  240
WEYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1870132972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G052000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301249.31e-100ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-69ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2C9VVX60.0A0A2C9VVX6_MANES; Uncharacterized protein
STRINGcassava4.1_021971m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]