PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G052900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32124 Da    PI: 8.3036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G052900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18129183256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Manes.05G052900.1.p 129 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 183
                          788899***********************************************98 PP
2HD-ZIP_I/II125.13.2e-40129218191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eLr +
  Manes.05G052900.1.p 129 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTQENRRLQKEVQELR-A 217
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Manes.05G052900.1.p 218 L 218
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.0E-30198IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.0E-18108183IPR009057Homeodomain-like
SuperFamilySSF466894.71E-19116186IPR009057Homeodomain-like
PROSITE profilePS5007117.329125185IPR001356Homeobox domain
SMARTSM003891.7E-15127189IPR001356Homeobox domain
PfamPF000469.2E-16129183IPR001356Homeobox domain
CDDcd000861.42E-14129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
SMARTSM003408.0E-26185228IPR003106Leucine zipper, homeobox-associated
PfamPF021836.0E-11185219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGEREDSLGL SLSLGAASQP SLKLNLRPIP SQLLQDNHHR ISLNDLFHSS DRSSDARPFQ  60
RGIDINRIPS LADCDDETGV SSPNSTISSI SGKRNEREHI GEETEAERTS CSRGGSDDED  120
GGAGGDASRK KLRLSKEQSL VLEETFKEHS TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CEYLKKCCEN LTQENRRLQK EVQELRALKL SPQLYMHMNP PTTLTMCPSC  240
ERVAVSSSSS SASASAAIAA STANPHPQRP VPIKPWTGLG LAIQHRDHNS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133SRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G052900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612216.10.0homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-104HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2C9VUW20.0A0A2C9VUW2_MANES; Uncharacterized protein
STRINGcassava4.1_023832m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.18e-73homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]