PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G066400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 508aa    MW: 54547.6 Da    PI: 9.1016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G066400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-105175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          + C +++rtG+C yG++C+++H++
  Manes.05G066400.1.p 51 LPDCVYYMRTGFCGYGGKCRYNHPR 75
                         589********************96 PP
2zf-CCCH39.96.8e-13129153327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+f+++tGtCk+G++CkF+H++
  Manes.05G066400.1.p 129 EPPCQFYLKTGTCKFGASCKFHHPR 153
                          79*********************96 PP
3zf-CCCH37.63.8e-12174199227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +CkF+H++
  Manes.05G066400.1.p 174 GEKECSYYLKTGQCKFGVTCKFHHPQ 199
                          7899********************97 PP
4zf-CCCH38.61.8e-12328354127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G++C+F+H++
  Manes.05G066400.1.p 328 PGEPECQYYLRTGDCKFGSSCRFHHPR 354
                          5799*********************96 PP
5zf-CCCH36.11.1e-11375400227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +  +C f++r+G Ck+G++CkF H++
  Manes.05G066400.1.p 375 GVQPCTFYLRNGNCKFGATCKFDHPM 400
                          6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6854876IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0015475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108126154IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6126153IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10129153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5131153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84172200IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5172199IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6174200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4178198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873327355IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6327354IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5333354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244373401IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-7373400IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9375400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6375404IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5377399IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MELYGRNQAR NGLQSGQQPE WSPVGGETGL EESMWRLSLA SSESYPERPG LPDCVYYMRT  60
GFCGYGGKCR YNHPRNRAAF MRLSRMFGSS WFGLFWFSGT TTLPTLGHLV REVEAAVRAT  120
GEYPERVGEP PCQFYLKTGT CKFGASCKFH HPRHGGGSLS HVPLNTHGYP LRPGEKECSY  180
YLKTGQCKFG VTCKFHHPQP AGTSMPESAP QFYQPVQSPS ITIPDQYGGA STGLRVRPQL  240
LAGSYVQGAY GPVLFSPGVV PIPGWSPYSA PVSPVLSPGA QPAVGTTSLY GVTQLSSSAP  300
ALAGPYPSPS SAVGLSSGSK EQSFPERPGE PECQYYLRTG DCKFGSSCRF HHPRDRVAPR  360
TNCVLSPLGL PLRPGVQPCT FYLRNGNCKF GATCKFDHPM GAMRYSPSTS SLIDMPVTPY  420
PVGSLLATLG PSSSSSDLRP ELIGVTKKDP YLSRIPSSGN TSSSSVGLIF SQTGSVPLSE  480
LQHSSQSSVS LPSGRSTRRG GDIHRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G066400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613100.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9VTZ80.0A0A2C9VTZ8_MANES; Uncharacterized protein
STRINGcassava4.1_006834m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein