PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G066400.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 384aa    MW: 41784.3 Da    PI: 8.98
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G066400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-105175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          + C +++rtG+C yG++C+++H++
  Manes.05G066400.3.p 51 LPDCVYYMRTGFCGYGGKCRYNHPR 75
                         589********************96 PP
2zf-CCCH40.44.8e-13129153327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+f+++tGtCk+G++CkF+H++
  Manes.05G066400.3.p 129 EPPCQFYLKTGTCKFGASCKFHHPR 153
                          79*********************96 PP
3zf-CCCH382.7e-12174199227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +CkF+H++
  Manes.05G066400.3.p 174 GEKECSYYLKTGQCKFGVTCKFHHPQ 199
                          7899********************97 PP
4zf-CCCH39.11.3e-12328354127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G++C+F+H++
  Manes.05G066400.3.p 328 PGEPECQYYLRTGDCKFGSSCRFHHPR 354
                          5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6854876IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108126154IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6126153IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10129153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5131153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84172200IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5172199IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6174200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4178198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873327355IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6327354IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5333354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MELYGRNQAR NGLQSGQQPE WSPVGGETGL EESMWRLSLA SSESYPERPG LPDCVYYMRT  60
GFCGYGGKCR YNHPRNRAAF MRLSRMFGSS WFGLFWFSGT TTLPTLGHLV REVEAAVRAT  120
GEYPERVGEP PCQFYLKTGT CKFGASCKFH HPRHGGGSLS HVPLNTHGYP LRPGEKECSY  180
YLKTGQCKFG VTCKFHHPQP AGTSMPESAP QFYQPVQSPS ITIPDQYGGA STGLRVRPQL  240
LAGSYVQGAY GPVLFSPGVV PIPGWSPYSA PVSPVLSPGA QPAVGTTSLY GVTQLSSSAP  300
ALAGPYPSPS SAVGLSSGSK EQSFPERPGE PECQYYLRTG DCKFGSSCRF HHPRDRVAPR  360
TNCVLSPLGL PLRPVREFMH FLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G066400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613100.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-177C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9VTV10.0A0A2C9VTV1_MANES; Uncharacterized protein
STRINGcassava4.1_006834m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-175C3H family protein