PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G066400.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 351aa    MW: 37935.8 Da    PI: 8.7714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G066400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.2e-105175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          + C +++rtG+C yG++C+++H++
  Manes.05G066400.4.p 51 LPDCVYYMRTGFCGYGGKCRYNHPR 75
                         589********************96 PP
2zf-CCCH40.64.3e-1396120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+f+++tGtCk+G++CkF+H++
  Manes.05G066400.4.p  96 EPPCQFYLKTGTCKFGASCKFHHPR 120
                          79*********************96 PP
3zf-CCCH38.22.4e-12141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +CkF+H++
  Manes.05G066400.4.p 141 GEKECSYYLKTGQCKFGVTCKFHHPQ 166
                          7899********************97 PP
4zf-CCCH39.21.1e-12295321127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G++C+F+H++
  Manes.05G066400.4.p 295 PGEPECQYYLRTGDCKFGSSCRFHHPR 321
                          5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6854876IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-75175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.10893121IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-696121IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873294322IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6294321IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5300321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MELYGRNQAR NGLQSGQQPE WSPVGGETGL EESMWRLSLA SSESYPERPG LPDCVYYMRT  60
GFCGYGGKCR YNHPRNRAAV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPR  120
HGGGSLSHVP LNTHGYPLRP GEKECSYYLK TGQCKFGVTC KFHHPQPAGT SMPESAPQFY  180
QPVQSPSITI PDQYGGASTG LRVRPQLLAG SYVQGAYGPV LFSPGVVPIP GWSPYSAPVS  240
PVLSPGAQPA VGTTSLYGVT QLSSSAPALA GPYPSPSSAV GLSSGSKEQS FPERPGEPEC  300
QYYLRTGDCK FGSSCRFHHP RDRVAPRTNC VLSPLGLPLR PVREFMHFLR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G066400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613100.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9VTZ40.0A0A2C9VTZ4_MANES; Uncharacterized protein
STRINGcassava4.1_006834m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-175C3H family protein