PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G068300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 725aa    MW: 81204.6 Da    PI: 6.074
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G068300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.2e-22148249199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd++++g +++ k++aee+       + ++ e ++l  +d++g +W +++ yr++++r++lt+GW+ Fv +++L +gD ++F 
  Manes.05G068300.1.p 148 FSKKLTSSDTSTHGGFSVLKRHAEEClppmdmsQDPP-E-QKLFAKDLHGSEWCFRHVYRGQPKRHLLTTGWSTFVTSKKLVAGDEFIFL 235
                          88*****************************844443.3.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+++v+r+
  Manes.05G068300.1.p 236 --RGENGELRIGVRRA 249
                          ..449999*****985 PP
2Auxin_resp94.12.2e-31274358182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsL 82 
                          a ha++t+++F+v+Y+P++s+seF++++++++k+ ++ + vG+Rf+m fe+e+++e+r+    Gt+++ +d+d +rWp S+Wr+ 
  Manes.05G068300.1.p 274 AFHAINTGTMFTVYYRPWTSPSEFIIPFDRYMKSAEIDFNVGTRFRMLFEGEECPEKRIerfEGTIISNEDVDHIRWPISEWRNF 358
                          679*****************************************************9988889********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-35139277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-35146262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-19147248No hitNo description
SMARTSM010191.5E-18148250IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603148250IPR003340B3 DNA binding domain
PfamPF023629.7E-20148249IPR003340B3 DNA binding domain
PfamPF065071.1E-28274358IPR010525Auxin response factor
PfamPF023097.0E-10624713IPR033389AUX/IAA domain
PROSITE profilePS5174520.108627708IPR000270PB1 domain
SuperFamilySSF542771.62E-9640703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MVKGNVICEV EGSSNDVLVE TKNCIDDGLP PNNHHGDKDD LYTELWHSCA GPLAYVPRAG  60
EKVVYFPQGH MEQVEAYMNQ DGPMEMPIYN LPSKIICKVV YVQLKAEAAT DEVFAQITLL  120
PEVQQDGLTS KDEENSQPLP RKASALSFSK KLTSSDTSTH GGFSVLKRHA EECLPPMDMS  180
QDPPEQKLFA KDLHGSEWCF RHVYRGQPKR HLLTTGWSTF VTSKKLVAGD EFIFLRGENG  240
ELRIGVRRAL KLQNNVSTTV ISAHSMQHGI LATAFHAINT GTMFTVYYRP WTSPSEFIIP  300
FDRYMKSAEI DFNVGTRFRM LFEGEECPEK RIERFEGTII SNEDVDHIRW PISEWRNFKV  360
KWDPTSDGFE RPERVSSWNI EPIEPVKRKR IYLQHPSKRS RAMDASLSVF PRMVKDGLFH  420
GPVEHATHNH SEVFQGQEKW DTGVQKMGAL KTPLSHLIPQ NPSSNNKAVG LGNQLQFSVH  480
VPFFPCPSGT VLFPGGNIER LGLPNCYCPV LSSYGDPENT TRSRNLSVPR ANSYNSGLQD  540
LGTSELKDAN EVQNAPPNGG GRYMLFGVDL VKSPQELPSP QVATYSDHES LYSVPPMSQS  600
SVSEPSKSIS GVNSENQCKN CCSATNQYCT KVLKYGAAGR SVDLSRFDGY NDLICELDQM  660
FEFKGSLIDG SSGWQVTYTD NEGDMMLIGD YPWQEFQCMV RRMFICTKEE IGKLNPNSPS  720
EVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1473938317355Auxin response factor 1
4ldw_A1e-1473938317355Auxin response factor 1
4ldw_B1e-1473938317355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G068300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611573.10.0auxin response factor 4-like
TrEMBLA0A2C9VU050.0A0A2C9VU05_MANES; Auxin response factor
STRINGcassava4.1_026340m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-156auxin response factor 2