PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G073200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 296aa    MW: 33407.2 Da    PI: 7.2076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G073200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021640123
                         EEETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                         ykC  C k ++ k++L+ H++   H
  Manes.05G073200.2.p 16 YKCYACYKQYKKKEHLVEHMKIsyH 40
                         9*******************97666 PP
2zf-C2H211.80.0007682102323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  C ++F ++s+L++H  ++
  Manes.05G073200.2.p  82 CDLCLEVFDSPSSLNKHREMC 102
                          999**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.1131645IPR007087Zinc finger, C2H2
PROSITE patternPS0002801840IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.103.4E-10136185IPR012337Ribonuclease H-like domain
SuperFamilySSF530988.63E-10140237IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.8E-11186242IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDSDSYPPTK ALTTRYKCYA CYKQYKKKEH LVEHMKISYH SAHQPRCAVC QKHCKSFESL  60
REHLTGPLAK TNCLGIFSDR GCDLCLEVFD SPSSLNKHRE MCCLSAPASL ATEIPTCTES  120
QIYVSGSIDE SYACKGGEAV AIDCEMVGGG SDGSLDLCAR VCLLDEDENI IFHSYVQPQI  180
PVTNYRDTAK YRPLMKTNLV SHSLKYLVQT YLGYNIQTGV HDPYEDCVSV MRLYKRMRAQ  240
NHHVEGSGIQ SICGGFDFWK PKELEKMTPE KLYEISRSNY RCWCLDLKGQ QPGLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G073200.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612186.10.0uncharacterized protein LOC110614820 isoform X3
TrEMBLA0A2C9VWA90.0A0A2C9VWA9_MANES; Uncharacterized protein
STRINGcassava4.1_022155m1e-179(Manihot esculenta)