PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G081700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 317aa    MW: 36059.5 Da    PI: 5.3212
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36121032102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e+++++ ++++isws+ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgFkk++ ++         weF+++ F +g+k
  Manes.05G081700.1.p  12 FLTKIFEMVDNPITNHVISWSAGGTSFVVWDPHSFSTDLLPRYFKHNNFSSFVRQLNTYGFKKIDPDR---------WEFANEGFLRGHK 92 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+k 
  Manes.05G081700.1.p  93 HLLRNIKRRKA 103
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-398101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEGLHDIGPP PFLTKIFEMV DNPITNHVIS WSAGGTSFVV WDPHSFSTDL LPRYFKHNNF  60
SSFVRQLNTY GFKKIDPDRW EFANEGFLRG HKHLLRNIKR RKAPPSQPLP QQQALGSCVE  120
VGRFGLDREI ERLKREKQIL IMELMKLKHQ QQNTNAYIQA MEQRIQSTQI KQQQTMQFLA  180
RAVQNPAFLQ QLAQLKDQRE ELEEAMTKKR RPIDQGGSST AESSCGDGGR NPIKAEPLEL  240
GDYVFKVSEL ETLALEMQGN GAARKRQEEE EGGSPEIEDR ELDEEFWDEL LSGNNGGGED  300
INVSAERLGY LGYSPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241010127129Heat shock factor protein 1
5d5v_B1e-241010127129Heat shock factor protein 1
5d5v_D1e-241010127129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G081700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612462.10.0heat stress transcription factor A-7a-like
SwissprotQ6VBB21e-105HFA2B_ORYSJ; Heat stress transcription factor A-2b
SwissprotQ9LUH81e-105HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2C9VWT90.0A0A2C9VWT9_MANES; Uncharacterized protein
STRINGcassava4.1_012115m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-97heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]