PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G081800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 455aa    MW: 49849.9 Da    PI: 8.9466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G081800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0579101123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Manes.05G081800.1.p  79 FVCEICNKGFQRDQNLQLHRRGH 101
                          89*******************88 PP
2zf-C2H212.30.0005155177123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.05G081800.1.p 155 WKCEKCSKIYAVQSDWKAHSKTC 177
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-678101No hitNo description
Gene3DG3DSA:3.30.160.601.5E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.1E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355280120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-6150175No hitNo description
SMARTSM00355170155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MFPAAISNST SLSEDASVSS GNRVQDFCGL NPVVSAVSPQ QQQQQQPKIK KKRSLPGNPD  60
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEIKKRAY  120
VCPEPSCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAHQLVS TNPIPQSLLL QNPQPHPSFF  240
PLTTHHHHPL SLNPWDPPPQ NPSNPQNPVQ VKPESHHFQL PPLFQEQPPS LSTHKGLITS  300
SFQSLSNPAA SASSHHLSAT ALLQQAATVG ATQAVGQSHM TQLDMGDLGT VSQAATDSVS  360
QISRQGSYLG NLAAWQKNDH LTRDFLGLTG DGHVGNGNVG NGNGGVNVSM NVREILTYTG  420
GVGLQQYSER DHTLLKPHGF GFPQQPASET WGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36151215367Zinc finger protein JACKDAW
5b3h_F1e-36151215367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G081800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-129AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613743.10.0protein indeterminate-domain 12-like
SwissprotO227591e-131IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A2C9VVS60.0A0A2C9VVS6_MANES; Uncharacterized protein
STRINGcassava4.1_007413m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-116indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]