PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G087300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 184aa    MW: 20684.6 Da    PI: 5.0777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G087300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000193355123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C++ F++   L  H++ H
  Manes.05G087300.1.p 33 YECVFCKRGFTTAQALGGHMNIH 55
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-63159No hitNo description
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MESNLHVDSK SPSEEETDRS RQANDDMGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
KPRPSSVIPS ISSKVDDDYY ASLRGSPSIQ SYPSYYSPAH HHHEVLINYQ TLLPAASTWG  120
FRSSQSDDLY MQSPQLLNPF EEDWRRSLSL QIGPSHVDDN KEKTEDGSEA DELDLELRLG  180
HDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G087300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614356.11e-135probable transcriptional regulator RABBIT EARS
TrEMBLA0A2C9VUH61e-134A0A2C9VUH6_MANES; Uncharacterized protein
STRINGcassava4.1_033324m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-13C2H2 family protein