PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G093100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 244aa    MW: 27512.7 Da    PI: 6.9227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G093100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002685107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C k F ++  L  H++ H
  Manes.05G093100.1.p  85 FECQYCFKEFANSQALGGHQNAH 107
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-580111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-681112No hitNo description
PROSITE profilePS5015711.40685112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDMEASTILS STVDGENCHS AESFVEKKLK LFGFELNPYK NDESRLKGSA EGDESVNSSN  60
TVSSLMAKPI NKEKSSTSEP DDKKFECQYC FKEFANSQAL GGHQNAHKKE RMKKKRLQLQ  120
ARRASISCYL QPFNNNLSYN RHGSTQWFYD PSCCTPEFTF YEDSHISFNP YDQDSHLNGS  180
QVFVPAQVPF RQETCMFTLT DPERSGENKP VIRKPSPLHA SKQTCKSLDL HLGLGLQSNI  240
TEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G093100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612487.10.0zinc finger protein 5-like
TrEMBLA0A2C9VUR50.0A0A2C9VUR5_MANES; Uncharacterized protein
STRINGcassava4.1_027412m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.18e-18zinc finger protein 5