PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G093800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 201aa    MW: 22099.9 Da    PI: 7.7633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-123478347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT++E+ l++ + ++lG+g+W+ I+r +  +Rt+ q+  + qky
  Manes.05G093800.1.p 34 PWTEDEHRLFLLGLQKLGKGDWRGISRNFVITRTPTQVATHAQKY 78
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1012783IPR017930Myb domain
SuperFamilySSF466894.79E-162884IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-163181IPR006447Myb domain, plants
SMARTSM007171.1E-73181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-103376IPR009057Homeodomain-like
CDDcd001672.01E-93478No hitNo description
PfamPF002491.6E-103478IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDQILNRGGV AAGYESDNVV HGSGSSCERK GGVPWTEDEH RLFLLGLQKL GKGDWRGISR  60
NFVITRTPTQ VATHAQKYYL HRNNRYRYRR GSSLFDITAD SSLGSLIEEE QVHQETATLP  120
TFPESLSPAF LTVADVNTME NLSLGSSSSN LKISPKLIRP VPIIPVPLSS KMADLNLNEK  180
NPTKEHLPLS LKLSTPSSEE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612875.11e-147transcription factor MYB1R1-like
TrEMBLA0A2C9VUS51e-145A0A2C9VUS5_MANES; Uncharacterized protein
STRINGcassava4.1_033048m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-33MYB_related family protein