PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G101800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 359aa    MW: 40004.9 Da    PI: 8.7737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G101800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.5e-312074155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rFve v+qLGG++kAtPk++++ m+++gLtl+h+kSHLQkYRl
  Manes.05G101800.1.p 20 KPRLKWTPELHQRFVESVRQLGGADKATPKNLMRSMGIPGLTLYHLKSHLQKYRL 74
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.5481777IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-291875IPR009057Homeodomain-like
SuperFamilySSF466891.51E-151975IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-222075IPR006447Myb domain, plants
PfamPF002492.6E-72273IPR001005SANT/Myb domain
PfamPF143792.8E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGLHNLQNQN MNLVLSTDAK PRLKWTPELH QRFVESVRQL GGADKATPKN LMRSMGIPGL  60
TLYHLKSHLQ KYRLGKSQPS QSQSQSQSQS QSQSQSQSQA SIENKKEDYK EIQSSNCDPR  120
AGIADGNQNP INESFQIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ  180
EALSGYNSSL GIELAKAELS RLVSMVNTGC QSSSISELTE IGGSNLKDTE RKLMRGTVCS  240
VESSLTSSES SGRKEDMKQK NQLGNTNNSN PVIIELPLMD IHPQENPWDN HKSEQVKKRS  300
CSTISDGICV EQPLVKRSKS GDKLRIFDLN SHYQNDFESG SKTLDLNCKG IEQVNGQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-191976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G101800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612698.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-86PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2C9VX510.0A0A2C9VX51_MANES; Uncharacterized protein
STRINGcassava4.1_010522m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.17e-83G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]