PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G106900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 525aa    MW: 57166 Da    PI: 8.7663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G106900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34241297259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Manes.05G106900.1.p 241 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHNHQ 297
                          8****************************************.***************8 PP
2WRKY106.21.7e-33412470159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dp++v++tYeg+Hnh+
  Manes.05G106900.1.p 412 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTSGCTVRKHVERAATDPRAVITTYEGKHNHD 470
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-29237299IPR003657WRKY domain
SuperFamilySSF1182903.53E-26238299IPR003657WRKY domain
SMARTSM007743.6E-37240298IPR003657WRKY domain
PROSITE profilePS5081123.709240299IPR003657WRKY domain
PfamPF031064.3E-26241297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-37397472IPR003657WRKY domain
SuperFamilySSF1182901.44E-29404472IPR003657WRKY domain
PROSITE profilePS5081138.595407472IPR003657WRKY domain
SMARTSM007741.7E-38412471IPR003657WRKY domain
PfamPF031064.6E-26413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MADNGTRHPS PPVSSPPPTS KSSSTSSARP ATISLPPRSF NETFFTSGIG MGFSPGPMTL  60
VSSFFSDSDD FKSFSQLLAG AMASPAANTN NNKLPFPPPQ QSKNSLADVS KPANLSIVPP  120
SPMFNLPPGL SPMALLDSPG FGLLSPQGSF GMTHQQALAQ VTAQAVHAHS SMHIQAQYSS  180
SLPSAQATSS TQFSSVTTNS TTLQQMLPSI PDPSDSIKES SDFTHSDQRS QAYSLGDKPN  240
DDGYNWRKYG QKQVKGSEFP RSYYKCTHPS CPVKKKVERS LDGQVTEIIY KGQHNHQPPQ  300
PNKRVKDAGS LKGNSDNQNN SELASQIQVG KMNKSKDRKD QESSQATPEL VSGTSDSEEV  360
GDTETAVDEN DEDEPNPKRR NTEVKVTEPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK  420
YGQKVVKGNP YPRSYYKCTT SGCTVRKHVE RAATDPRAVI TTYEGKHNHD VPAAKGSSHG  480
TTSSNPSERK QQNVEKHSLD NRRDFGTNNQ QPIARLRLKE EQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-43241473878Probable WRKY transcription factor 4
2lex_A8e-43241473878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G106900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276010.0KT827601.1 Manihot esculenta WRKY transcription factor 26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613186.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2C9VWJ70.0A0A2C9VWJ7_MANES; Uncharacterized protein
STRINGcassava4.1_006823m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-159WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]