PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G114400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 312aa    MW: 34878.1 Da    PI: 8.4676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G114400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-173481148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Manes.05G114400.1.p 34 RGPWTLEEDNLLIHYIACHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 81
                         89********************************************97 PP
2Myb_DNA-binding521.6e-1687130146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ +++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Manes.05G114400.1.p  87 RGNLSPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0432981IPR017930Myb domain
SuperFamilySSF466894.12E-3032128IPR009057Homeodomain-like
SMARTSM007178.3E-153383IPR001005SANT/Myb domain
PfamPF002491.1E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223588IPR009057Homeodomain-like
CDDcd001679.47E-123681No hitNo description
PROSITE profilePS5129424.70682136IPR017930Myb domain
SMARTSM007179.5E-1586134IPR001005SANT/Myb domain
PfamPF002493.5E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2389135IPR009057Homeodomain-like
CDDcd001672.99E-1191130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRAVTMSSLS SSSLCKKKSL SSSSDCDNSD QLRRGPWTLE EDNLLIHYIA CHGEGRWNLL  60
AKRAGLRRTG KSCRLRWLNY LKPDVKRGNL SPQEQLLILD LHSKWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKQARHLK VDANSTAFQD IIKRFWIPRL LQKIEGSTTS SSSSSSSTIL  180
SENPTVVAHQ PVNYAAQNFQ YPIPPPPPQE VPGNHQGRHD HNSDSENGSN PCISSTESIN  240
ISQISQVSEY PASLFHGMGS FPKDSYYVDN MEAMSLASLS VPAGVVQNLG ESNWGGYDFG  300
DMWSMDELMA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24321365108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G114400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1782400.0JQ178240.1 Hevea brasiliensis cultivar CATAS7-33-97 myb domain protein (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612022.10.0transcription factor MYB62-like
TrEMBLA0A2C9VVC40.0A0A2C9VVC4_MANES; Uncharacterized protein
STRINGcassava4.1_012335m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-76myb domain protein 62