PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G129400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 764aa MW: 87348.6 Da PI: 6.8112

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G129400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.2	2.1e-31	81	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+e +++ +++r+r+ tr+gCka+++vkk+++gkw+vtkl +eHnH+l+p Manes.05G129400.1.p 81 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGNEN--RSKRQRTITRVGCKAQMTVKKQSSGKWVVTKLIKEHNHDLVP 168 9***************************************9988..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-28	81	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-31	289	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.707	573	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-10	575	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-9	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MDIEQLNVME FDDLGGSGRE DEVTALDLEH PDGFDLEYND NHNNQELLEG PSTGPSTSNF 60 DANLEPYEGM EFDSEQSARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR 120 REGNENRSKR QRTITRVGCK AQMTVKKQSS GKWVVTKLIK EHNHDLVPPD KVHCLRSHRH 180 VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNVGFTK VDCQNYMSSS RQRTLGSGGQ 240 VVFDYLKQMQ AEDSGFFYAV QGDFDNSTGN IFWADANSRM NYTYFGDTVT FDTTYRTNRY 300 RVPFAPFTGW NHHGQPVLFG CALLLNESES SFVWLFETWL AAMSGRHPIS ITTDQDRIIR 360 AAVSQVFPGT RHRFCKWNIF KEAQEKLSDV YHSHPSFEVE FQRCINLTET VDEFESCWES 420 LVQRYDLGDR EWLQSMYSAR QQWVPVYLMD TFFGEMSVMQ GSDNINSYFD GYINASTNIQ 480 MLIKQHERAI ANRYEKEVKA DYDTMNIPPI LKTPSPMEKQ AANFYTRKIF MKFQEELVET 540 LAYPATVIDD MGSTITYRVA KFGEDCKAHF VRFHVFEKRA SCTCQMFEFS GIICRHILAV 600 FRVTNVLTLP SHYILKRWTR NAKSQVLLDE RALGLPTNSQ ESFAVRCENL SQEALKYVDD 660 GAESIHIYNV AIDALHEASR KVAAAKKQGP VPMHNTLVNG CQQLQPRCLD QDKKIQELTD 720 ELKHASKKCE AYQSKLLAVV KDMEEQKLKI SVKIQNVRLN LKD*

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MDIEQLNVME FDDLGGSGRE DEVTALDLEH PDGFDLEYND NHNNQELLEG PSTGPSTSNF  60
DANLEPYEGM EFDSEQSARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR  120
REGNENRSKR QRTITRVGCK AQMTVKKQSS GKWVVTKLIK EHNHDLVPPD KVHCLRSHRH  180
VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNVGFTK VDCQNYMSSS RQRTLGSGGQ  240
VVFDYLKQMQ AEDSGFFYAV QGDFDNSTGN IFWADANSRM NYTYFGDTVT FDTTYRTNRY  300
RVPFAPFTGW NHHGQPVLFG CALLLNESES SFVWLFETWL AAMSGRHPIS ITTDQDRIIR  360
AAVSQVFPGT RHRFCKWNIF KEAQEKLSDV YHSHPSFEVE FQRCINLTET VDEFESCWES  420
LVQRYDLGDR EWLQSMYSAR QQWVPVYLMD TFFGEMSVMQ GSDNINSYFD GYINASTNIQ  480
MLIKQHERAI ANRYEKEVKA DYDTMNIPPI LKTPSPMEKQ AANFYTRKIF MKFQEELVET  540
LAYPATVIDD MGSTITYRVA KFGEDCKAHF VRFHVFEKRA SCTCQMFEFS GIICRHILAV  600
FRVTNVLTLP SHYILKRWTR NAKSQVLLDE RALGLPTNSQ ESFAVRCENL SQEALKYVDD  660
GAESIHIYNV AIDALHEASR KVAAAKKQGP VPMHNTLVNG CQQLQPRCLD QDKKIQELTD  720
ELKHASKKCE AYQSKLLAVV KDMEEQKLKI SVKIQNVRLN LKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G129400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021613745.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9VVT3	0.0	A0A2C9VVT3_MANES; Uncharacterized protein
STRING	EMJ10105	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.05G129400.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]