PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G130800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 935aa    MW: 104159 Da    PI: 6.4455
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G130800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.8e-29614665152
               RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  Manes.05G130800.1.p 614 AEKSITLQVLQRYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 665
                          589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.484604685IPR003035RWP-RK domain
PfamPF020426.1E-25617665IPR003035RWP-RK domain
SuperFamilySSF542771.45E-23827921No hitNo description
PROSITE profilePS5174526.775837920IPR000270PB1 domain
SMARTSM006665.4E-28837920IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2405.0E-23838916No hitNo description
PfamPF005641.4E-18838919IPR000270PB1 domain
CDDcd064074.09E-39839918No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MEDRILSTGA MLGTRADSAM DFDCMDKLLL EGCWLETIDG SEFFNPSPFS SAAFVDASFQ  60
WPTSEINNCD LASSPSKRSN REEEQISLLP RNSALNEAHG RSLINAEALD HGVGSADRLG  120
YNTTEGSEVS RRWWIGPRTN PGPKTSVRDR LIRALGYIRE FTKDKDVLIQ IWVPVDKGGR  180
RVLTTHDQRF ALVPNCQRLA NYRDISTNYQ FSVEEDSKDM VGLPGRVFLG KVPEWTPDVQ  240
FFRSDEYPRV DHAQQYDVRG TLALPVFEQG SSTCLGVIEV VTTKQKIKYH PELESVCMAL  300
KAVDLQSSEV PSLQHVKMCD MSYQAVLPEI HEVLRSACET HKLPLAQTWV PCIQQGKGGC  360
RHSDNNYYRC VSTIDLACYV HDTGVQAFHE ACSEHHLLKG QGVAGEAFLT NQPCFSSDIT  420
SYRKTEYPLS HHARMFGLHA AVAIRLRSLH SGAADFVLEF FLPAYCTDPE KQKEMLTSLS  480
ITVQQVCQSL RVVTDKELEE ETGCPISELL ASSVDTPPKE EMLVTQPYSV SYGGESLSHA  540
DRLTGIQQSG SVVSSCQKKK QKVLEDQISV DCWQNQEDYS LKVSVESGGD SAVAEGSFSS  600
VFKGKKGEKR RTKAEKSITL QVLQRYFAGS LKDAAKSIGV CPTTLKRICR QHGIKRWPSR  660
KIKKVGHSLQ KLQLVIDSVQ GASGSFQIGS FYTNFPELAS PNLSRSNLFS TLKQSDHPEP  720
SSIQSERVIF SSQAATPKSP SSSCSQSSNS SHCISSGTQL HASAVTTPTS EDPVLGENSD  780
NCVLKRARSD AELRASIQEQ NLLPRSQSQK SLGEQPNLGN LLPLPNNSSS ILRDFDTQRV  840
KVTYGNEKIR FRMPNNWELK DLLQEIARRF NIDDIHKYEL KYLDDESEWV LLTCDDDLEE  900
CIDVCQSSQT HTIKFLLQVS PHLFDRSMNS RGLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G130800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612622.10.0protein NLP4-like isoform X1
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2C9VVT20.0A0A2C9VVT2_MANES; Uncharacterized protein
STRINGcassava4.1_027289m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein