PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G130800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 925aa    MW: 103085 Da    PI: 6.5057
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G130800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.8e-29604655152
               RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  Manes.05G130800.2.p 604 AEKSITLQVLQRYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 655
                          589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.484594675IPR003035RWP-RK domain
PfamPF020426.0E-25607655IPR003035RWP-RK domain
SuperFamilySSF542771.42E-23817911No hitNo description
SMARTSM006665.4E-28827910IPR000270PB1 domain
PROSITE profilePS5174526.775827910IPR000270PB1 domain
PfamPF005641.4E-18828909IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.9E-23828906No hitNo description
CDDcd064073.58E-39829908No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MLGTRADSAM DFDCMDKLLL EGCWLETIDG SEFFNPSPFS SAAFVDASFQ WPTSEINNCD  60
LASSPSKRSN REEEQISLLP RNSALNEAHG RSLINAEALD HGVGSADRLG YNTTEGSEVS  120
RRWWIGPRTN PGPKTSVRDR LIRALGYIRE FTKDKDVLIQ IWVPVDKGGR RVLTTHDQRF  180
ALVPNCQRLA NYRDISTNYQ FSVEEDSKDM VGLPGRVFLG KVPEWTPDVQ FFRSDEYPRV  240
DHAQQYDVRG TLALPVFEQG SSTCLGVIEV VTTKQKIKYH PELESVCMAL KAVDLQSSEV  300
PSLQHVKMCD MSYQAVLPEI HEVLRSACET HKLPLAQTWV PCIQQGKGGC RHSDNNYYRC  360
VSTIDLACYV HDTGVQAFHE ACSEHHLLKG QGVAGEAFLT NQPCFSSDIT SYRKTEYPLS  420
HHARMFGLHA AVAIRLRSLH SGAADFVLEF FLPAYCTDPE KQKEMLTSLS ITVQQVCQSL  480
RVVTDKELEE ETGCPISELL ASSVDTPPKE EMLVTQPYSV SYGGESLSHA DRLTGIQQSG  540
SVVSSCQKKK QKVLEDQISV DCWQNQEDYS LKVSVESGGD SAVAEGSFSS VFKGKKGEKR  600
RTKAEKSITL QVLQRYFAGS LKDAAKSIGV CPTTLKRICR QHGIKRWPSR KIKKVGHSLQ  660
KLQLVIDSVQ GASGSFQIGS FYTNFPELAS PNLSRSNLFS TLKQSDHPEP SSIQSERVIF  720
SSQAATPKSP SSSCSQSSNS SHCISSGTQL HASAVTTPTS EDPVLGENSD NCVLKRARSD  780
AELRASIQEQ NLLPRSQSQK SLGEQPNLGN LLPLPNNSSS ILRDFDTQRV KVTYGNEKIR  840
FRMPNNWELK DLLQEIARRF NIDDIHKYEL KYLDDESEWV LLTCDDDLEE CIDVCQSSQT  900
HTIKFLLQVS PHLFDRSMNS RGLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G130800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612622.10.0protein NLP4-like isoform X1
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2C9VVT20.0A0A2C9VVT2_MANES; Uncharacterized protein
STRINGcassava4.1_027289m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein