PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G153000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26672.2 Da    PI: 9.2682
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G153000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fs++gkl+ey+s
  Manes.05G153000.1.p  9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSTSGKLHEYIS 59
                         79***********************************************86 PP
2K-box93.24.3e-3171169199
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yqk+ g++ +++++e++q+ l+kLk+ + nL+re+R+++Ge+L+++s+++L+ Leq+++++l+ iR++Kn+++ +qi ++ kk ++++e 
  Manes.05G153000.1.p  71 YQKTLGVDIWSSQYEKMQETLKKLKEANMNLRREIRKRMGECLNDMSFEDLRGLEQDMDTALNVIRERKNRVIANQIVTSTKKLRNVEEV 160
                          78999999********************************************************************************** PP

                K-box  91 nkaLrkkle 99 
                          +++L +++e
  Manes.05G153000.1.p 161 HRNLLHEYE 169
                          ****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
CDDcd002655.36E-40280No hitNo description
SuperFamilySSF554552.09E-36395IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2082168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.75984174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFST SGKLHEYISP  60
STTTKQVFDQ YQKTLGVDIW SSQYEKMQET LKKLKEANMN LRREIRKRMG ECLNDMSFED  120
LRGLEQDMDT ALNVIRERKN RVIANQIVTS TKKLRNVEEV HRNLLHEYEA RARDEDPHYG  180
LVDNEGDYGC VIGYQNGGQA PRDMFALRLQ PNHPNLHSGA GSDLTTYSLL D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15159159MEF2 CHIMERA
6byy_B2e-15159159MEF2 CHIMERA
6byy_C2e-15159159MEF2 CHIMERA
6byy_D2e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G153000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612346.11e-174floral homeotic protein DEFICIENS
SwissprotP237061e-117DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2C9VWG11e-173A0A2C9VWG1_MANES; Uncharacterized protein
STRINGcassava4.1_015343m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]