PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G155600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 426aa MW: 46200.7 Da PI: 7.3955

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G155600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	310	348	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Manes.05G155600.1.p 310 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 348 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.16E-5	308	352	No hit	No description
SuperFamily	SSF47459	9.03E-11	308	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-9	312	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MKNKSCIIME SANLHHQHHQ LQLQLVGSSS LTTPSSNYGA GSTLSSSNLN PNCNGVDLNP 60 RQKNEFLIPS LNSSTIQNLG LIHWNSNSAG CFTNQSADHD LQLAKIKQDL PDSFPRFTDM 120 LNDPSTVEDS HLSSPSYEQK HMTDLSEKLL LKTISSGFPI NVHQFSSAQI YSNAHDCSSP 180 GSSIPRRGNF SQIYPSINIS NLNRSPPSIS GAIDMNLQAL DHLNSTRFSR SIGQPSHDNL 240 GMYNDSISYD LEHMHIPSSS PIQTSSFTTN EILEAKRPSD SLMEPKATQA AATKKSRLET 300 RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ VETLSVPYMK 360 SSRNKASTRI TQEGSTEEGK DELKTDLRSR GLCLVPLSCM SYVTADGGGG GGGGIWPPPN 420 FGGGT*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MKNKSCIIME SANLHHQHHQ LQLQLVGSSS LTTPSSNYGA GSTLSSSNLN PNCNGVDLNP  60
RQKNEFLIPS LNSSTIQNLG LIHWNSNSAG CFTNQSADHD LQLAKIKQDL PDSFPRFTDM  120
LNDPSTVEDS HLSSPSYEQK HMTDLSEKLL LKTISSGFPI NVHQFSSAQI YSNAHDCSSP  180
GSSIPRRGNF SQIYPSINIS NLNRSPPSIS GAIDMNLQAL DHLNSTRFSR SIGQPSHDNL  240
GMYNDSISYD LEHMHIPSSS PIQTSSFTTN EILEAKRPSD SLMEPKATQA AATKKSRLET  300
RASCPPFKVR KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ VETLSVPYMK  360
SSRNKASTRI TQEGSTEEGK DELKTDLRSR GLCLVPLSCM SYVTADGGGG GGGGIWPPPN  420
FGGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G155600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612010.1	0.0	transcription factor bHLH110-like isoform X2
Swissprot	Q9SFZ3	4e-74	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2C9VWL9	0.0	A0A2C9VWL9_MANES; Uncharacterized protein
STRING	cassava4.1_009095m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.05G155600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]