PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G155600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 307aa MW: 33186.2 Da PI: 7.6093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G155600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.8e-05	191	229	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Manes.05G155600.2.p 191 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 229 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-5	189	233	No hit	No description
SuperFamily	SSF47459	5.5E-11	189	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	193	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MLNDPSTVED SHLSSPSYEQ KHMTDLSEKL LLKTISSGFP INVHQFSSAQ IYSNAHDCSS 60 PGSSIPRRGN FSQIYPSINI SNLNRSPPSI SGAIDMNLQA LDHLNSTRFS RSIGQPSHDN 120 LGMYNDSISY DLEHMHIPSS SPIQTSSFTT NEILEAKRPS DSLMEPKATQ AAATKKSRLE 180 TRASCPPFKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQN QVETLSVPYM 240 KSSRNKASTR ITQEGSTEEG KDELKTDLRS RGLCLVPLSC MSYVTADGGG GGGGGIWPPP 300 NFGGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G155600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612010.1	0.0	transcription factor bHLH110-like isoform X2
Swissprot	Q9SFZ3	3e-71	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2C9VWJ6	0.0	A0A2C9VWJ6_MANES; Uncharacterized protein
TrEMBL	A0A2C9VWL9	0.0	A0A2C9VWL9_MANES; Uncharacterized protein
STRING	cassava4.1_009095m	1e-180	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-71	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.05G155600.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]