PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G170200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 238aa    MW: 26439.5 Da    PI: 9.6297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G170200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-183782147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W+++Ed +l ++v+++G+++W++I+r++  gR++k+c++rw + 
  Manes.05G170200.1.p 37 KGPWSADEDRILTRLVERHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82
                         79*****************************9.***********985 PP
2Myb_DNA-binding54.33.1e-1791133347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Manes.05G170200.1.p  91 PFSPAEDETILAAHARYGNR-WATIARFLP-GRTDNAVKNHWNST 133
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7733287IPR017930Myb domain
SuperFamilySSF466891.58E-3134130IPR009057Homeodomain-like
SMARTSM007173.1E-163685IPR001005SANT/Myb domain
PfamPF002491.2E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-243890IPR009057Homeodomain-like
CDDcd001679.99E-153981No hitNo description
SMARTSM007172.8E-1588136IPR001005SANT/Myb domain
PROSITE profilePS5129420.74689138IPR017930Myb domain
PfamPF002492.0E-1491133IPR001005SANT/Myb domain
CDDcd001675.58E-1291134No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2391137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGAMNMCSTS SDSSTSEFSF NGNVTTPRNV NKLERIKGPW SADEDRILTR LVERHGPRNW  60
SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDETI LAAHARYGNR WATIARFLPG  120
RTDNAVKNHW NSTLKRRARE QQHQMMMEGS FDNSSIGVGV VAAAPASTPR NEEEEVLTAL  180
TLAPPGINGS SSNGRKEAER KAESLPAGFW DVIRNVIAGE VREYMSSTIN ESSWGFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-40341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G170200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614419.11e-176transcription factor MYB44-like
TrEMBLA0A2C9VYF41e-174A0A2C9VYF4_MANES; Uncharacterized protein
STRINGcassava4.1_031637m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-58myb domain protein 73