PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G176100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 453aa    MW: 52080.1 Da    PI: 6.8288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G176100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011199222123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ Cg+ ++++ +Lk+H r  H
  Manes.05G176100.1.p 199 YICGVCGRKCKTNLDLKKHFRQlH 222
                          89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.8E-6118189IPR029060PIN domain-like
PROSITE profilePS5015710.887199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280201222IPR007087Zinc finger, C2H2
CDDcd061673.51E-12211353No hitNo description
Gene3DG3DSA:3.40.50.10101.8E-6284349IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDHWPIFFRQ YPSLSLLTIS SSLCYRQISE WQESMVSLSL CNPIDTSLRK LPLLHFPQSL  60
ASPINLKNKF TFPSKLSFIN PFHCTRCLHV ACAADHVVSS AATSEIDMVR NRQGVYTSKK  120
NRVVVLWDLD NKPPRGPPYP AAMALKQLAQ RFGDIIEMSA YANRHAFVHL PNWVLEERRE  180
RKQLDVLERK GLVTPSELYI CGVCGRKCKT NLDLKKHFRQ LHERERQKKL NRMKSLKGKK  240
RQRFKERFIS GNHKYNEEAR RLLTPKIGYG LASELRRAGV YVKTVEDKPQ AADWALKRQI  300
EHSMNRGVDW LFLVSDDSDF CDILKRAREA NLGTVVVGDR DRALGRHADL WVPWLGVENG  360
EITENDLVPK STNRSEDWEE NDGVFSVTHF EGNMACLQSD MDNFLNELAG ARSDCSGVKI  420
SVFSEVDEEE DQDYLLWDSE DEDIEEEDGD FL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G176100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613044.10.0uncharacterized protein LOC110615495
RefseqXP_021613045.10.0uncharacterized protein LOC110615495
RefseqXP_021613046.10.0uncharacterized protein LOC110615495
RefseqXP_021613047.10.0uncharacterized protein LOC110615495
TrEMBLA0A2C9VYK80.0A0A2C9VYK8_MANES; Uncharacterized protein
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-166C2H2-like zinc finger protein