PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G178900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 192aa    MW: 21309.2 Da    PI: 10.4335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G178900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000226486123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F+++  L  H++ H
  Manes.05G178900.1.p 64 FSCNFCKRKFRSSQALGGHQNAH 86
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-66190No hitNo description
Gene3DG3DSA:3.30.160.606.2E-46290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.246491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MIFQSKITGI SPIKKNNKLF GDRYFGGNEG GNSNEWLNSS ISQPGDLVDI EAVSLSNSIP  60
NKIFSCNFCK RKFRSSQALG GHQNAHKRER GAIIRCQYGR QISANGMFDS KTVALSFGIQ  120
FQVHSLVHKP YKERNAMVAR FNNVNQRCMG GWKSTLPEEA TMANWPGSSR IPAEQNSQPS  180
DLLKVDLTLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G178900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612415.11e-141zinc finger protein 7-like
TrEMBLA0A2C9VYN71e-140A0A2C9VYN7_MANES; Uncharacterized protein
STRINGcassava4.1_029632m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF252933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-17zinc finger protein 7