PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G180800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 210aa    MW: 22554.7 Da    PI: 7.9835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G180800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.7e-302102196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Manes.05G180800.1.p   2 SCNGCRVLRKGCSETCILRSCLhwissPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelal 96 
                          +++++++e++l
  Manes.05G180800.1.p  92 HVCHAAVETVL 102
                          *****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4471107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SCLHWISSPE AQGNATLFLA KFFGRSDLMS LISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCHAAVET VLSGGILLPL SGIFAGVLAP  120
NYDELTDSFS AEACELSNMW TQSKPYGNIG RENQASVLND SLTPKLVTGR AGRVKRSRGA  180
ASFYTEESSE TTTVTSNDGD RKKLLKLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G180800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614049.11e-153LOB domain-containing protein 38-like
SwissprotQ9SN233e-64LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2C9VYR31e-152A0A2C9VYR3_MANES; Uncharacterized protein
STRINGcassava4.1_016230m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-60LOB domain-containing protein 38