PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G187300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 348aa    MW: 39322.4 Da    PI: 4.3674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G187300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12181224654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Manes.05G187300.1.p 181 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 224
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16178242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9181224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-5182229No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00176273314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MELNQHGYLE ELLTFRRDTW ETMPSFPSEM SELFSSGWSF DCFDDNLAAT LPPISFHEDL  60
SSPLDQEFNN YYFNEVSCPF GDEFSTPPLA DEFSAPQFTD SSYNTLDSLP FPVQEGTPMS  120
ATMEDDQDLG LLPNNVHGLK MQDTCKVEPI QSPEIPVFNI GSCPERKLRG KKLEGQPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELLERIQS LQQEIEVGSD  240
QLNMMNILKD TKASDFIVRN SPKFDVERVN ESTRIDICCA AKPGLLLSTV NTLEALGLEI  300
QQCVISCFND FAMQASCSEE LEQRRLISSE DVKQALFRSA GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G187300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612441.10.0transcription factor bHLH93-like
SwissprotQ9LSL16e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2C9VXK40.0A0A2C9VXK4_MANES; Uncharacterized protein
STRINGcassava4.1_010965m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]