PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G188800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 167aa MW: 18502.2 Da PI: 8.2146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G188800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.5	1.1e-43	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+C++lrr+C+kdCv+apyfp+++p kfa+vhk+FGasnv+k+l+a+p ++reda++slvyeA+ar++dPvyG+vg i+ lq+q++ql Manes.05G188800.1.p 6 PCASCRLLRRRCTKDCVFAPYFPSNEPCKFAIVHKVFGASNVSKMLQAIPAHQREDAARSLVYEANARVKDPVYGCVGAISILQNQVSQL 95 7*************************************************************************************** PP DUF260 91 kaelallkee 100 + +l+++++e Manes.05G188800.1.p 96 QMQLSEARAE 105 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVGSSPCASC RLLRRRCTKD CVFAPYFPSN EPCKFAIVHK VFGASNVSKM LQAIPAHQRE 60 DAARSLVYEA NARVKDPVYG CVGAISILQN QVSQLQMQLS EARAEILCIQ MLEKPTIPNH 120 LNHDVKSSSV YPATNFNTFP QSHCFNFESP SNVIIQDPLK SESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	4	121	9	126	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	4	121	9	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G188800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614105.1	1e-122	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2C9VZ16	1e-120	A0A2C9VZ16_MANES; Uncharacterized protein
STRING	cassava4.1_026605m	1e-121	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-71	LBD family protein

Link Out ? help Back to Top
Phytozome	Manes.05G188800.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]