PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G189600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 286aa    MW: 31044.3 Da    PI: 6.943
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G189600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.4e-16206242135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Manes.05G189600.1.p 206 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 242
                          *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-970105IPR010399Tify domain
PROSITE profilePS5132014.04270105IPR010399Tify domain
PfamPF062005.3E-1274104IPR010399Tify domain
PROSITE profilePS5101712.65138180IPR010402CCT domain
PfamPF062034.1E-16138180IPR010402CCT domain
SuperFamilySSF577161.43E-12200255No hitNo description
SMARTSM004011.4E-15200253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.383200256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15204247IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.27E-16205256No hitNo description
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
PfamPF003203.9E-14206242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MYGHSQPMNV HHQIAAPAAD DEDGAAADSI DHHHIRYEDG NATGVVVEDV SHDSVYVPSS  60
GAGSELVVHR GDVSSQLTLT FRGQVYVFDA VTPDKVQAVL LLLGGCELTS GPHGLEVAAQ  120
NQRGAVVEYP GRCTQPQRAA SLNRFRQKRK ERCFDKKVRY SVRQEVALRM QRNKGQFTSS  180
KKSDGAYGWG GGQDSGQDDI QQETTCTHCG ISSKSTPMMR RGPSGPRSLC NACGLFWANR  240
GTLRDLSKKT QEQQHSVTPI EQGEAEANDS DSGNAMQTHN NLVTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G189600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613255.10.0GATA transcription factor 25-like isoform X2
SwissprotQ9LRH68e-98GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2C9VZ250.0A0A2C9VZ25_MANES; Uncharacterized protein
STRINGcassava4.1_013436m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-89GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]