PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G203900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 734aa    MW: 79341.7 Da    PI: 6.2146
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32312369260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Manes.05G203900.1.p 312 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 369
                          7****************************************.***************85 PP
2WRKY102.82e-32525583159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Manes.05G203900.1.p 525 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 583
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28309370IPR003657WRKY domain
SuperFamilySSF1182901.96E-25310370IPR003657WRKY domain
SMARTSM007741.1E-36311369IPR003657WRKY domain
PfamPF031062.9E-25312368IPR003657WRKY domain
PROSITE profilePS5081123.399312370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-37510585IPR003657WRKY domain
SuperFamilySSF1182901.96E-28517585IPR003657WRKY domain
PROSITE profilePS5081138.32520585IPR003657WRKY domain
SMARTSM007741.9E-37525584IPR003657WRKY domain
PfamPF031067.5E-25526583IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAIVG DDISSKTIPE PSREIRTEGL FLGSLENMTT  60
GNTDKKDAKQ TGGAEFRELA PFSEQKLSSR GGLVERMAAR AGFNAPRLNT ESIRSADLSP  120
NPEIRSPYLT IPPGLSPTTL LDSPVFLSNS WAQPSPTTGK FSFITNVNNK NSTGISEPVD  180
RSKENFFEDI NASSFAFKPV PDSGSSFFLG ATSKQSFPSI EVSVQSENSL QSHGVEHIKV  240
QSQNRNTLPF TVDFSRSATE KDNGSNSVIT DRRVLDTIGG GAEHSPPLDE QQDEGDQIAS  300
GDSVAACGTP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCPVKKKVER SHEGHITEII  360
YKGAHNHPKP PPNRRAAIGS SNPVMDMQLD TPEQTGLQSG IDNDPVWAST QKGIAAGAPD  420
WRNDNVEVTS SASVVPEFGN PSSSVQVQNG NHFESGDAVD ASSTFSNDED DDRATHGSVG  480
CDGEGDESES KRRKIETYPT DMGGATRAIR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK  540
GNPNPRSYYK CTNAGCTVRK HVERASHDLK SVITTYEGKH NHDVPAARNS SHVNSGSSST  600
GPAQAGSAVQ THVHRPEPSQ VHNMSRFERS AAYGSFSFPG RQQLGPTPSF SFGMNQPGLA  660
NLAMAGLCPG PPKMPVMAVN PYLAQQCPMN EMGFMLPKGE PKVEPLSEPS LNLSNNPSVY  720
QQIMSRLPLG PHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36312586878Probable WRKY transcription factor 4
2lex_A3e-36312586878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276370.0KT827637.1 Manihot esculenta WRKY transcription factor 62 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613371.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A140H8R60.0A0A140H8R6_MANES; WRKY transcription factor 62
STRINGcassava4.1_002430m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]