PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G001500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ZF-HD

Protein Properties

Length: 171aa MW: 19005.1 Da PI: 8.3814

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G001500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.6	6.9e-29	10	61	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +YkeCl+NhAaslG++a+DGCgEf+ + ++++++l+CaACgCHRnFHR+ + Manes.06G001500.1.p 10 DVYKECLRNHAASLGSYATDGCGEFTLD---HTSPSTLQCAACGCHRNFHRKVTY 61 58***********************8...6789***************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.7E-24	11	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-17	12	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.99	12	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.2E-24	12	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	9.4E-29	86	155	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.71E-16	88	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-30	96	153	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDGGDHTTND VYKECLRNHA ASLGSYATDG CGEFTLDHTS PSTLQCAACG CHRNFHRKVT 60 YSSSSSRPDQ STVMEMMEYV DVGSRLPGER SSGKTKRFRT KFTAEQKEKM LGFAEKLGWK 120 LQRKDEEDEV ERFCRGVGIS RQVFKVWMHN HKNSSSSSST TGNASSLTTQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	95	158	17	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G001500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616895.1	1e-126	zinc-finger homeodomain protein 2-like
Swissprot	A2XLF4	9e-41	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	9e-41	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
Swissprot	Q9SB61	7e-41	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2C9VN31	1e-124	A0A2C9VN31_MANES; Uncharacterized protein
STRING	cassava4.1_033936m	1e-125	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-42	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Manes.06G001500.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]