PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G003200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-X1
Protein Properties Length: 1103aa    MW: 119839 Da    PI: 8.1367
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G003200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.4e-05355372118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+ +CH+GpC+ C
  Manes.06G003200.2.p 355 CGNHECSNTCHPGPCGDC 372
                          ****************99 PP
2zf-NF-X119.42.3e-06509527119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++lCH+G CppC 
  Manes.06G003200.2.p 509 CGQHSCESLCHTGHCPPCL 527
                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.814121182IPR019787Zinc finger, PHD-finger
SuperFamilySSF578501.62E-6123184No hitNo description
PROSITE patternPS013590124179IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465124180IPR001841Zinc finger, RING-type
CDDcd060088.43E-6213274No hitNo description
SMARTSM004380.023236254IPR000967Zinc finger, NF-X1-type
PfamPF014228.2238253IPR000967Zinc finger, NF-X1-type
CDDcd060082.99E-10281329No hitNo description
SMARTSM004380.0015291310IPR000967Zinc finger, NF-X1-type
PfamPF014226.4E-4293308IPR000967Zinc finger, NF-X1-type
CDDcd060082.70E-9345388No hitNo description
SMARTSM004384.2E-4355374IPR000967Zinc finger, NF-X1-type
PfamPF014224.9E-4355372IPR000967Zinc finger, NF-X1-type
CDDcd060084.17E-14403449No hitNo description
PfamPF014220.0069407430IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8E-4413432IPR000967Zinc finger, NF-X1-type
CDDcd060082.72E-4461520No hitNo description
SMARTSM00438260471505IPR000967Zinc finger, NF-X1-type
PfamPF0142218471482IPR000967Zinc finger, NF-X1-type
CDDcd060081.49E-8499542No hitNo description
SMARTSM004387.7E-4509528IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-4509526IPR000967Zinc finger, NF-X1-type
CDDcd060083.83E-5556604No hitNo description
SMARTSM004380.026566584IPR000967Zinc finger, NF-X1-type
PfamPF014222.6566583IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1619650IPR000967Zinc finger, NF-X1-type
PfamPF014220.33619634IPR000967Zinc finger, NF-X1-type
CDDcd060084.37E-5648697No hitNo description
PfamPF014224.4652678IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021659680IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.4E-5897948IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MSFPSRNDHR DRTSRFPNQH ARQTWVPRGS GSNAVVNPPS SFGSPPNGIG GGHTNHTSAP  60
PSPRHSGNSN ASRGRKPWPT NHRRDREKER DRSHTHEVKD LKDPNLPQLV QEIKDKLVKG  120
TVECMICYDM VRRSASIWSC SSCYSIFHLN CIKKWARAPT SIDLSAEKSQ GFNWRCPGCQ  180
SVQLTSLKEI KYVCFCGKRT EPPSDLYLTP HSCGEPCGKP LERRVPGAGE NKEDLCPHVC  240
VLQCHPGPCP PCKAFAPPRV CPCGKKIITT RCSDRMSVLT CGQHCDKLLE CWRHRCEKIC  300
HVGSCDPCQV LVSASCFCKK KVETVLCGDM AVKGEVKAED GVFSCNLTCK KMLACGNHEC  360
SNTCHPGPCG DCDLMPGRVK SCYCGKTSLQ LERKSCLDPI PNCDQICGKP LACRIHHCKE  420
VCHAGDCPPC LVLVTQKCRC GSTSRTVECF KTSSENEKFA CEKPCGRKKN CGRHRCSERC  480
CPISNLHNLL TGDWDPHFCQ MACGKKLRCG QHSCESLCHT GHCPPCLETI FTDLSCACGR  540
TSIPPPLPCG TPPPSCQLPC SVPQPCGHSA SHSCHFGDCP PCSVPIAKEC VGGHVVLGNI  600
PCGSKDIRCN KLCGKTRQCG LHACGRTCHP PPCDTSSSGI EAGPRASCGQ TCGAPRRDCR  660
HTCTALCHPS SPCPDVRCEF PVTITCSCGR ITASVPCDAG GSNSGFNADT VFEASIVQKL  720
PVPLQPVEST GKKIPLGQRK LVCDDECAKL ERKRVLADAF DITPNLEALH FGENSAVTEL  780
LSDLYRRDPK WVLAVEERCK YLVLGKNRGS INGLKLHVFC PMLKDKRDAV RLIADRWKLA  840
VYAAGWEPKR FIVVHVTPKS KTPSRVIGVK GTTTLTAPHP PAFDPLVDMD PRLVVSFLDL  900
PREADISSLV LRFGGECELV WLNDKNALAV FNDPARAATA MRRLDHGSVY QGAVVVLQSG  960
GASNAPANPW GGTGNTKGGA VAALKPWKKA VVPEHGWRED SWGSEEWSHG SVDVQASAWK  1020
GKEAPITATI NRWSALDSES TSRTSATSVR IEDPAKLAAN SRMELNPSIS TSSELPGGAS  1080
SQAELSEVVD DWEKAYDTEN IQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G003200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614783.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2C9VN510.0A0A2C9VN51_MANES; Uncharacterized protein
STRINGcassava4.1_000626m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1