PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G018700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 239aa    MW: 26895.8 Da    PI: 4.7579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G018700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-135192854
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr ++P+ +      +++Ka+i + A++YI++L
  Manes.06G018700.1.p 51 SERNRRKKLNDRLFALRAVVPNiS------RMDKASIIKDAIDYIQEL 92
                         6*********************66......9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1744108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-134797No hitNo description
SMARTSM003536.1E-154998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1650107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-105192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.21E-7160227No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-4163224No hitNo description
PROSITE profilePS516719.545164237IPR002912ACT domain
CDDcd048735.09E-4165226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDSIQYIEGE VATYELSSLI FSSWAIDEIS GYESSSLDGA ASSVTYKNVV SERNRRKKLN  60
DRLFALRAVV PNISRMDKAS IIKDAIDYIQ ELHEQEKIIQ AEIRELESGN LKKGPGYEFE  120
EDLPVFLGSK KKKIDQFYYS CGSRAYPIED LELSVAYMGD KILRVSLTCS KRTDTMVKLC  180
EAFESLQLNI ISADITTVSG RLLMTVFIKA NEEESDYLKK KIETAIGALH DPQSLMIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1448110969Transcription factor MYC2
5gnj_B5e-1448110969Transcription factor MYC2
5gnj_E5e-1448110969Transcription factor MYC2
5gnj_F5e-1448110969Transcription factor MYC2
5gnj_G5e-1448110969Transcription factor MYC2
5gnj_I5e-1448110969Transcription factor MYC2
5gnj_M5e-1448110969Transcription factor MYC2
5gnj_N5e-1448110969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G018700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615071.11e-174transcription factor bHLH35-like isoform X1
SwissprotQ2HIV92e-71BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2C9VNG71e-173A0A2C9VNG7_MANES; Uncharacterized protein
STRINGcassava4.1_015642m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-74bHLH family protein