PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G028200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 362aa    MW: 39993.9 Da    PI: 6.4141
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G028200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-082060438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         r+C+ ++   + lfC+ ++ +lC +C +++H        H+
  Manes.06G028200.1.p 20 RRCDSCKTAAAALFCRADSAFLCLNCDTKIHAAnklvsrHE 60
                         79******99*********************6555666665 PP
2zf-B_box29.61.4e-0962107342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Manes.06G028200.1.p  62 VWMCEVCEQAPAAFACKADAAVLCVTCDADIHSAnplarrHERVPV 107
                          689*****************************66899999999986 PP
3CCT69.87.1e-24290333144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Manes.06G028200.1.p 290 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 333
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-131764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6081764IPR000315B-box-type zinc finger
CDDcd000216.30E-92064No hitNo description
PfamPF006434.8E-72061IPR000315B-box-type zinc finger
PROSITE profilePS5011910.79360107IPR000315B-box-type zinc finger
PfamPF006431.4E-762107IPR000315B-box-type zinc finger
SMARTSM003361.4E-965107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787290332IPR010402CCT domain
PfamPF062035.5E-18290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGIEAETLKN LTGGWTVASR RCDSCKTAAA ALFCRADSAF LCLNCDTKIH AANKLVSRHE  60
RVWMCEVCEQ APAAFACKAD AAVLCVTCDA DIHSANPLAR RHERVPVEPF FDSAESIVKS  120
SPFNFLVPTD QNGGPDGHHR QDDNMESISW LLPNPSNLNS KLSLENLEMK TAGDLFFPEM  180
DPFLDMEFHQ SHSTVTDSLV PVQTKPAPIP IINKEICYDV DFCRSKLSSF NYPSQSLSQS  240
VSSSSLDVGV VPEGNSMTDF GRNTSTSTDP SAHISDSSSN QATQICGINR EARVLRYREK  300
RKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRTEIECDGD GLYDSSMSFL SDAQYGVVPS  360
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G028200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616745.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-128COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2C9VMB50.0A0A2C9VMB5_MANES; Uncharacterized protein
STRINGcassava4.1_010378m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-111CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]