PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G057200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

YABBY

Protein Properties

Length: 185aa MW: 20751.6 Da PI: 8.4

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G057200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	195.4	2.4e-60	7	157	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a + q l+ ++ +++n++ + + + s+ Manes.06G057200.1.p 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAATFQSLSWQDV---------------QGTNYTLPDYRIDLGSS 81 579*****************************************999999988884...............33333333333333333 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ s+k+s+ +v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWah+P+ihfgl Manes.06G057200.1.p 82 SKFSNKISTRAPARNVAEDRVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIHFGL 157 444444444444444445679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-69	9	157	IPR006780	YABBY protein
SuperFamily	SSF47095	3.8E-8	100	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	104	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSSCIDVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAATFQSLS 60 WQDVQGTNYT LPDYRIDLGS SSKFSNKIST RAPARNVAED RVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHY PHIHFGLMLE TNSRAKVDDA SEKQLMPRAA 180 VCNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G057200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	2e-64	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614683.1	1e-137	axial regulator YABBY 5-like
Swissprot	Q8GW46	5e-89	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2C9VN73	1e-136	A0A2C9VN73_MANES; Uncharacterized protein
STRING	cassava4.1_017177m	1e-137	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-91	YABBY family protein

Link Out ? help Back to Top
Phytozome	Manes.06G057200.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]