PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G060000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 480aa    MW: 52383.2 Da    PI: 7.688
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G060000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-32258313156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Manes.06G060000.1.p 258 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 313
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.045255315IPR017930Myb domain
SuperFamilySSF466899.41E-17256316IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28256316IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26258313IPR006447Myb domain, plants
PfamPF002498.5E-7260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MASPSELTLD CKPHSYSMLL KSFGDQNDHQ TQKLEEFLSR LEEERLKIDA FKRELPLCMQ  60
LLTNAVETSR QQLQSYRANQ GPRPVLEEFI PLKNSTSETL DNSSNISDKA NWMTTAQLWS  120
QESNETKLQT TLNTFPKKTN IGFSVSPKIS LDTKQRNGGA FLPFSKERNL CPSPILALAS  180
TEPEMEDQKC LETENGFSCP KRGNSEKIGN NNGGVVVIEQ GKGTGNSSSD GQATNTGTGN  240
CTNNTTTSTT TSSQAHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN  300
DEVKSHLQKY RLHTRRPSPS PQATGAPARL VVLGGIWVPP EYATAAAAAH TGAPTLYGAH  360
PASHAPPPHF CAAPPMPQDF YTTAAAAAPS SPQPTHHQMH HHHHTLHQLH MYKATSQAHS  420
SPESDVRGGD RSESIEDGKS ESSSWKSGEN GGDRKGLASL REDGDDSNGS EISLKPLRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G060000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615103.10.0myb family transcription factor EFM-like
SwissprotQ9ZQ851e-131EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2C9VPT30.0A0A2C9VPT3_MANES; Uncharacterized protein
STRINGcassava4.1_028489m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-105G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]