PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G064200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 476aa    MW: 53833.6 Da    PI: 5.552
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G064200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.16.9e-22142195155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+ WtpeLH +F  a++ L G ekA Pk ile+m+v+ Lt  +v+SHLQkY++
  Manes.06G064200.1.p 142 KPRILWTPELHLKFTAAISIL-GDEKARPKPILEIMNVPKLTQRQVASHLQKYKS 195
                          79*******************.9******************************86 PP
2Response_reg27.12.1e-1067041107
                          HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
         Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                          + ++ l++   +mp+md l +l ++ e++  +p+i+++++ + + a++a+  Ga+ f+ Kp++ ++l
  Manes.06G064200.1.p   6 KDRFKLVMANADMPDMDYLPFLHKLLEKN--IPVILMSSERSVSAAIKAIVEGASFFFNKPISLDDL 70 
                          566999*******************9866..********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011019.691178IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-8571No hitNo description
PfamPF000728.6E-7571IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23006.1E-14585No hitNo description
SuperFamilySSF521722.93E-12683IPR011006CheY-like superfamily
PROSITE profilePS512949.162139198IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-23140199IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16140199IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-19142195IPR006447Myb domain, plants
PfamPF002491.9E-5147194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVEDQKDRFK LVMANADMPD MDYLPFLHKL LEKNIPVILM SSERSVSAAI KAIVEGASFF  60
FNKPISLDDL KYLWQHVYRK KRSCSFISTR KNAPADDTKT KDKQIELVMK WPNENKKSRK  120
KGKRLETMEE EEENKQISLK KKPRILWTPE LHLKFTAAIS ILGDEKARPK PILEIMNVPK  180
LTQRQVASHL QKYKSQVQRI CQTGTSNKPA ASRSTNFYGR RSFDTLVKKT TPPIFYQRRP  240
YSDWKKMGDM IQMLPSGSCP PDISSSYTSQ NKNQVLWTSD GKTQELDSLA GLFSSGNSEQ  300
NSVHFPTNFT DGSQINMEFM QVSETTKFLA EFNDSDEEID VMAFLNPPGE IPNLDNILTA  360
SSDWNSEQDV AYPAQRSMSQ ADADKQKLDA TVVSGSASCS IDQSQHLPDP ADLFKILDEE  420
PAGIKDLASD HEPNSGDVDK YCEWLTNILH GDADNIHDAA EFNYGNERFG NEDMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16140200363ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123KKSRKKGKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G064200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616584.10.0two-component response regulator ORR30
TrEMBLA0A2C9VPS20.0A0A2C9VPS2_MANES; Uncharacterized protein
STRINGcassava4.1_021193m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-39response regulator 2