PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G066700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 236aa    MW: 26775 Da    PI: 7.744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G066700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-09126173455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN+++ +L+ l+P +     k +  a +L   ++Y++sLq
  Manes.06G066700.1.p 126 SHSLAERVRREKINEKLKNLQNLVPGC----YKTMGMAVMLDVIINYVQSLQ 173
                          8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.33E-11120177No hitNo description
SuperFamilySSF474598.9E-17120191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16122184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.262122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6126173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-8128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAYKLTENLQ NLKPSFSGLD SSNLLLIDHK ALENFRSTDD QDQFVDFSYG RSFTNHQQQS  60
YLPMNLANNI QSSLHVSPAA AVSGTGQSEN IKSFGGRKRK RKDEKDLQKP TEVVHVRAKR  120
GQATDSHSLA ERVRREKINE KLKNLQNLVP GCYKTMGMAV MLDVIINYVQ SLQNQIEFLS  180
MKLSAASMYY DFNLENDNII ETTQGTNAYE VQQMERIGRE GYGEASNYFH SAWFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101RKRKRK
296102RKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G066700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617081.11e-177transcription factor bHLH75-like
SwissprotA4D9983e-53BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A2C9VNM31e-176A0A2C9VNM3_MANES; Uncharacterized protein
STRINGcassava4.1_033904m1e-129(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148131112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-55bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]