PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G071700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 370aa    MW: 41012.2 Da    PI: 9.377
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G071700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.8e-1467115155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Manes.06G071700.1.p  67 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 115
                          89****9888.8*********3.....5**********99*************98 PP
2B3100.97.5e-32200300196
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+ tpsdv+k++rlv+pk++ae++      +++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++
  Manes.06G071700.1.p 200 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqnVSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRS 289
                          89***************************996677899**************************************************87 PP

                          SSSEE..EEEE CS
                   B3  86 grsefelvvkv 96 
                             +++l++ +
  Manes.06G071700.1.p 290 TGPDKQLYIDW 300
                          66777677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.9E-967115IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1767123IPR016177DNA-binding domain
CDDcd000183.16E-2567125No hitNo description
Gene3DG3DSA:3.30.730.107.2E-2068123IPR001471AP2/ERF domain
SMARTSM003801.3E-2868129IPR001471AP2/ERF domain
PROSITE profilePS5103220.07368123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.9E-42194303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-32198294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-28199289No hitNo description
PROSITE profilePS5086314.198200304IPR003340B3 DNA binding domain
SMARTSM010195.0E-24200304IPR003340B3 DNA binding domain
PfamPF023621.5E-28200300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDGSCIDEST ATSDSISVSI SPTSAVSHFP PPTKSPESPL CRVGSGSSVI LDSEFGVEAE  60
SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAAKAYDIAA QRFRGRDAIT  120
NFKPQGEENE DDDIETAFLN SRSKAEIVDM LRKHTYKDEL EQSKRNYLID GQGKQHRNPG  180
ANNAALSGSG RVLKEREQLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLQN VSNSTKGVLL  240
NFEDITGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDIVSFQRST GPDKQLYIDW  300
KVKTGPNPVV CSVKPVQMVR LFGVNIFKLA ENNSGGAEGA GGCNGKRSIR EVELSSLECI  360
KKQRIIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5819730711121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G071700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617162.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M51e-154RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2C9VR170.0A0A2C9VR17_MANES; Uncharacterized protein
STRINGcassava4.1_010068m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-146RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]