PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G090300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 443aa    MW: 48580.9 Da    PI: 4.9512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G090300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed++l+ +++++G g W+t +++ g+ R++k+c++rw +yl
  Manes.06G090300.1.p 14 KGAWTADEDQKLIAYIQEHGEGGWRTLPQKAGLQRCGKSCRLRWANYL 61
                         79********************************************97 PP
2Myb_DNA-binding58.41.6e-1867112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++teE+++++++++ lG++ W++Iar+++ +Rt++++k++w+++l
  Manes.06G090300.1.p  67 RGEFSTEEEQKIIQLHASLGNK-WSAIARHLP-KRTDNEIKNYWNTHL 112
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.457961IPR017930Myb domain
SuperFamilySSF466892.49E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002499.5E-151461IPR001005SANT/Myb domain
CDDcd001678.43E-101661No hitNo description
PROSITE profilePS5129426.79762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2765116IPR009057Homeodomain-like
SMARTSM007179.6E-1866114IPR001005SANT/Myb domain
PfamPF002498.9E-1767112IPR001005SANT/Myb domain
CDDcd001671.83E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009682Biological Processinduced systemic resistance
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGRTPCCKEA GLKKGAWTAD EDQKLIAYIQ EHGEGGWRTL PQKAGLQRCG KSCRLRWANY  60
LRPDIKRGEF STEEEQKIIQ LHASLGNKWS AIARHLPKRT DNEIKNYWNT HLKKRLIDKG  120
IDPVTHRQIA PSPTSSPNHN SCNVGEDRTD SHFKPIQRST SSTSAKLLNR VSAEFAQMQR  180
KELATSHQTP SPCLGAIKAL LLNSAKDAIT CSASSGGGGS GSGDDSDVEI LPSRPISRSS  240
SSRILNKMAT KLVPSRSFDL LKNNLSVPSM ATTSVSDASP TVCSYNNVDS PISISDFLES  300
IPTSSSACDS YELTENLGMG EDQVNEALTA LHQAIELDTP EYPTYTPYEL EEFLGNFGGE  360
DGETFNNDTN QSEACDSQVP ISVEPTSDFI EKFTNMPFGC SPDEHSTIKP YCYSEKESNG  420
GAFEVNMNDW NDDLDLVNYA MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
1mse_C9e-27121162105C-Myb DNA-Binding Domain
1msf_C9e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G090300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615015.10.0transcription factor MYB122-like
TrEMBLA0A2C9VQN80.0A0A2C9VQN8_MANES; Uncharacterized protein
STRINGcassava4.1_027220m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07690.11e-79myb domain protein 29