PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G096600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 320aa    MW: 36068.9 Da    PI: 4.527
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G096600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1993146356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Manes.06G096600.1.p  93 KKRRLSVDQVHFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWK 146
                          566899***********************************************9 PP
2HD-ZIP_I/II129.21.7e-4192183192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L ke++ L++e
  Manes.06G096600.1.p  92 EKKRRLSVDQVHFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYEALHTSYNSLKADYDALLKEKDILKAE 181
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          ++
  Manes.06G096600.1.p 182 VS 183
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1981150IPR009057Homeodomain-like
PROSITE profilePS5007117.36288148IPR001356Homeobox domain
SMARTSM003894.5E-2091152IPR001356Homeobox domain
CDDcd000869.02E-1993149No hitNo description
PfamPF000461.9E-1693146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-2095155IPR009057Homeodomain-like
PRINTSPR000317.2E-6119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000317.2E-6128144IPR000047Helix-turn-helix motif
PfamPF021833.6E-15148189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIKSMATGGR VAGCSGSNFS ALLQNQRGPC ATSQPLDPFF LTGSSSSFLG SRSMVSFEDV  60
HQVNGSTRPF FRTFDQDENG DDELDEYFHQ PEKKRRLSVD QVHFLEKSFE VENKLEPERK  120
IQLAKELGLQ PRQVAIWFQN RRARWKTKQL EKDYEALHTS YNSLKADYDA LLKEKDILKA  180
EVSLLTDKML LREKGNLELS DKDTLSQEPP KNPIGDSTSE GEVSKVSIVA CKQEDISSAK  240
SDIFDSDSPH YTDGVHSSLL EAGDSSYVFE PDQSDLSQDE EDNLSKNLLP SYVFPKLEDV  300
NYSEAAASFE DHAFWCWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G096600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616241.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2C9VPI50.0A0A2C9VPI5_MANES; Uncharacterized protein
STRINGcassava4.1_012035m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-47homeobox 1