PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G123900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 248aa    MW: 28463.2 Da    PI: 9.1054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G123900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49141371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdeelv eyLk+kv + +l++ ++i+e++++k++PwdLp  +   e+e yfFs+++ ky++g+r nrat+sg+Wkatg d+
  Manes.06G123900.1.p  14 LPPGFRFQPTDEELVFEYLKRKVLSWPLPA-SIIPEINVFKFDPWDLPGDI---EQERYFFSNKEAKYPNGNRINRATASGFWKATGVDR 99 
                          79****************************.89***************554...5799******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ s+k++++g+kktLvfy+g++p+++ktdW+mheyrl
  Manes.06G123900.1.p 100 QIGSSKNQAMGMKKTLVFYRGKNPHASKTDWIMHEYRL 137
                          ************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-559173IPR003441NAC domain
PROSITE profilePS5100554.74114173IPR003441NAC domain
PfamPF023656.0E-2615137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDKFNFLREG MMKLPPGFRF QPTDEELVFE YLKRKVLSWP LPASIIPEIN VFKFDPWDLP  60
GDIEQERYFF SNKEAKYPNG NRINRATASG FWKATGVDRQ IGSSKNQAMG MKKTLVFYRG  120
KNPHASKTDW IMHEYRLVSV GNIACNNFQP TKNSSQNSSE QIEKWVLCRI FMKKRNSEIN  180
QACKDERIEN VAVMSHQPRF FDFLTREKIV FDSVSSSSSS SSSSIITEVS SNGEDLGEES  240
SSTRNFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-511217815170NO APICAL MERISTEM PROTEIN
1ut4_B1e-511217815170NO APICAL MERISTEM PROTEIN
1ut7_A1e-511217815170NO APICAL MERISTEM PROTEIN
1ut7_B1e-511217815170NO APICAL MERISTEM PROTEIN
4dul_A1e-511217815170NAC domain-containing protein 19
4dul_B1e-511217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G123900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752881e-54KC775288.1 Jatropha curcas NAC transcription factor 010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615420.10.0NAC domain-containing protein 83-like
SwissprotQ9FY936e-76NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2C9VRR00.0A0A2C9VRR0_MANES; Uncharacterized protein
STRINGcassava4.1_031849m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-77NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]