PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G127000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 248aa    MW: 27672.4 Da    PI: 9.4787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G127000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-1954103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +g+W+AeIrdp+    + +r++lg+f+ ae Aa a+++a+++++g
  Manes.06G127000.1.p  54 HYRGVRHRP-WGKWAAEIRDPK----KaARVWLGTFDNAEAAALAYDEAALRFKG 103
                          7*****888.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.1E-3253112IPR001471AP2/ERF domain
SMARTSM003803.3E-3554117IPR001471AP2/ERF domain
CDDcd000181.20E-1854112No hitNo description
PROSITE profilePS5103224.43454111IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2154112IPR016177DNA-binding domain
PfamPF008473.5E-1254103IPR001471AP2/ERF domain
PRINTSPR003672.5E-135566IPR001471AP2/ERF domain
PRINTSPR003672.5E-1393113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNAMVSALVQ VIGNSHNNPL QVHENPLSIP QSNTQGHDQP QQPVPDQGNT RRRHYRGVRH  60
RPWGKWAAEI RDPKKAARVW LGTFDNAEAA ALAYDEAALR FKGSKAKLNF PERVQGRSEL  120
GFLTNRQDLH AGTQQIMTRR VTDPPCPPHT QQEAYTTRFQ YPQFLLPSGN YGFNYAEPVG  180
RYSSGESYLS PASSAASSSS SSSSSSSSTT SHQQEELIRF SMQFGNPYSH YNPPTNWMDF  240
DSTRGRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2553114466ATERF1
3gcc_A4e-2553114466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G127000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615111.10.0ethylene-responsive transcription factor ERF115-like
SwissprotQ9FH541e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2C9VQ980.0A0A2C9VQ98_MANES; Uncharacterized protein
STRINGcassava4.1_021388m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]