PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G127100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LFY
Protein Properties Length: 382aa    MW: 42913.2 Da    PI: 6.7887
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G127100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY653.62.7e-19913671386
              FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 
                          mdpeaf+aslfkwdpr+++ ++p+rlle a++++++l+a  a+  r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeeld++m
  Manes.06G127100.1.p   1 MDPEAFTASLFKWDPRTVV-PAPNRLLE-AVAPPPQLTAGYAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMM 88 
                          9**************9876.66778865.44566666777888888899***************************************** PP

              FLO_LFY  91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekk 180
                          +sls+ifr+dllvGeryGikaavraerrrleee+  ++rr+lls d+++aldalsqeglseepvq+ekeaagsgg+g  ++e++aa+   
  Manes.06G127100.1.p  89 NSLSQIFRWDLLVGERYGIKAAVRAERRRLEEED--SRRRHLLSGDTTNALDALSQEGLSEEPVQQEKEAAGSGGSG--AWEAAAAA--- 171
                          ********************************88..99999********************************9998..88887776... PP

              FLO_LFY 181 seeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkia 270
                            +e+k++    ++rk +++     d d+++e +e++e++g++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+ia
  Manes.06G127100.1.p 172 --AERKQQ----RRRKGQRK---VVDIDHDDE-NENDENGGAGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIA 251
                          ..223333....22333332...234444433.44556778889********************************************** PP

              FLO_LFY 271 kerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfn 360
                          k+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplv+iaarqgwdida+fn
  Manes.06G127100.1.p 252 KDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVTIAARQGWDIDAIFN 341
                          ****************************************************************************************** PP

              FLO_LFY 361 ahprLsiWYvPtkLrqLChlerskas 386
                          ahprL+iWYvPtkLrqLCh+er++a+
  Manes.06G127100.1.p 342 AHPRLAIWYVPTKLRQLCHAERNSAA 367
                          **********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.1E-2101367IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPEAFTASL FKWDPRTVVP APNRLLEAVA PPPQLTAGYA VRPRELCGLE ELFQAYGIRY  60
YTAAKIAELG FTVNTLLDMK DEELDEMMNS LSQIFRWDLL VGERYGIKAA VRAERRRLEE  120
EDSRRRHLLS GDTTNALDAL SQEGLSEEPV QQEKEAAGSG GSGAWEAAAA AAERKQQRRR  180
KGQRKVVDID HDDENENDEN GGAGGYERQR EHPFIVTEPG EVARGKKNGL DYLFHLYEQC  240
REFLIQVQNI AKDRGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY ALHCLDEDAS  300
NALRRAFKER GENVGAWRQA CYKPLVTIAA RQGWDIDAIF NAHPRLAIWY VPTKLRQLCH  360
AERNSAAASS SVSGGGDDLP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1142053812194PROTEIN LEAFY
2vy2_A1e-1142053812194PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G127100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615449.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A2C9VQH90.0A0A2C9VQH9_MANES; Uncharacterized protein
STRINGcassava4.1_031323m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-110floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]