PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G130900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 234aa    MW: 26624.7 Da    PI: 8.525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G130900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-06941091126
                          GTS--TTTTT-SS-SS CS
              zf-CCCH  11 rtGtCkyGdrCkFaHg 26 
                          r+G C++Gd C +aHg
  Manes.06G130900.1.p  94 RNGKCNRGDACEYAHG 109
                          78*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-484110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.16484111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-590112IPR000571Zinc finger, CCCH-type
SMARTSM0035619119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLTGINTTNY NSFYDFGDYA FSGRNVHPSS QYDNIHDAIY GSDEFRMYAY KIKRCTRTRS  60
HDWTECPYAH RGEKATRRDP RKVPYVAIAC PGFRNGKCNR GDACEYAHGV FEYWLHPARY  120
RTRACNAGRY CQRKVCFFAH TPDQLRSEKK YACPFVYRAR MNGGDGGFGN GPGSEEGATS  180
SPVRIDGGSC FEGVSELLSS WRNLKIKDEE KKQKKADLEG DLPQLDWISE LVQ*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G130900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614826.11e-177zinc finger CCCH domain-containing protein 54
SwissprotO650362e-82C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2C9VQE71e-175A0A2C9VQE7_MANES; Uncharacterized protein
STRINGcassava4.1_024397m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.19e-79C3H family protein