PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G143100.1.p
Common NameDREB2
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 232aa    MW: 25542.7 Da    PI: 5.4191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G143100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1967117155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+++l+g
  Manes.06G143100.1.p  67 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 117
                          68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1467117IPR001471AP2/ERF domain
SMARTSM003801.6E-3168131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3268127IPR001471AP2/ERF domain
PROSITE profilePS5103222.95868125IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2268127IPR016177DNA-binding domain
PRINTSPR003673.2E-96980IPR001471AP2/ERF domain
CDDcd000189.98E-3269127No hitNo description
PRINTSPR003673.2E-991107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDVFSHYPDP LSFANHSSSL DLPDSSSLSD HGCSAPRASL SDEEVLLASS YPKKRAGRKK  60
FRETRHPVYR GVRRRNSGKW VCEVREPNKK SRIWLGTFPT AEMAARAHDV AALALRGRSA  120
CLNFADSSWR LPVPASTDAK DIQKAAAEAA MAFQPVGTEG FSEEIKRENK KTTGEESEDV  180
FYMDEEAIFG MPGLLAYMAE GMLLPPPQCV EESGEDKEMT AADMSLWSFS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15661241271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G143100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6155740.0JN615574.1 Manihot esculenta dehydration-responsive element-binding protein 2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616052.11e-171dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ934e-83DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLV9INN31e-170V9INN3_MANES; Dehydration-responsive element-binding protein 2
STRINGcassava4.1_015361m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-69dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]