PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G143400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 683aa    MW: 74312.4 Da    PI: 6.6172
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.6e-26204257155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k++++Wt++LH+rF++av+++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Manes.06G143400.1.p 204 KAKVVWTNTLHNRFLQAVSHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRM 257
                          6799*****************.********************************7 PP
2Response_reg77.93.4e-26231311109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +livdD+ + + ++ ++l++  + +v + +d+ +al++l+  +  +Dl+++D+ mpgm+Glel k+ ++e  ++p+i+++a ++e+ +l+
  Manes.06G143400.1.p  23 ILIVDDDSTSLAIVSSMLKSCSL-QVVSIKDSLDALATLRSANgeFDLLITDLHMPGMNGLELQKHVKQEF-NIPVIIMSADDKESAILK 110
                          8**********************.9999***********888888************************99.****************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga  +++Kp+++++l++
  Manes.06G143400.1.p 111 SIESGAAFYIVKPVNQDDLRN 131
                          ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.69E-3220139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.1E-3620144No hitNo description
SMARTSM004483.5E-2821133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.24322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.26E-2724137No hitNo description
PROSITE profilePS5129410.05201260IPR017930Myb domain
SuperFamilySSF466899.32E-19202261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-26203261IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-26204257IPR006447Myb domain, plants
PfamPF002493.4E-6207256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MSNGREASTQ SLNKNTCLFK IKILIVDDDS TSLAIVSSML KSCSLQVVSI KDSLDALATL  60
RSANGEFDLL ITDLHMPGMN GLELQKHVKQ EFNIPVIIMS ADDKESAILK SIESGAAFYI  120
VKPVNQDDLR NIWQYAMASK KGKEVVVCEN AQEETSSNEK LIVCEEAASS SSANEEGSQK  180
KRRGRKRERE EEQQEEDGPA PAKKAKVVWT NTLHNRFLQA VSHIGLEKAV PKKILEFMNV  240
PGLTRENVAS HLQKYRMFLK KVAEKGFSTS RNLSEKVLRS SFAYGHATSM LQNSRQEHSS  300
ILRQQPFTRS SFQPGYGASV HGIGSSSFGL SRFHNEEASS SNSVTQICYG QSSLFCNQAS  360
TRQPMFGSPY PLHQANLSTF NNIGINLSSN TATSYGLTSA TNPMQMNPQQ NQSNLQNHAS  420
PSKFGLFRFG CSSYSSGTCS MGTINGSYPR LNQNSTYAGI RLTSDGELIG NGQKRFNGNE  480
LLSGCNNSGN GLVNWTRNNN GNNAPPRNGE FGFSDGQVTC FSSTGFGSES QCSPTLSPAN  540
PENTSVVTPL SQQNFITGLG NALGENDINA LNNLMNNASN LGSISDNNQH EVGEGGLGEL  600
LFGTSCTNPC QEERNAEEFL NVNLLSSQYH AEVCYPVNEL LNKEFSSACT IADTTSWTEQ  660
QSSVQASSTH GRNSESQQCR QC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23203263464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616646.10.0two-component response regulator ARR12-like
TrEMBLA0A2C9VQU90.0A0A2C9VQU9_MANES; Uncharacterized protein
STRINGcassava4.1_026409m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.13e-56response regulator 21