PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G151400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 633aa    MW: 69654.5 Da    PI: 6.7022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G151400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.81.8e-1062616312373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++Ll++A a+ +g++  a ++L+r+s+  +p+ ++ +Rl  y++ AL++r++      ++  +p + +e  s+e++++++l++e+sP++
  Manes.06G151400.1.p 261 RQTLLDAASAIYEGKNDVACEILTRVSQVLNPRVNSEHRLMEYMLMALKSRVNP-----FE--NPPPVAELYSKEHVSSTQLLYELSPCF 343
                          689**************************************************9.....33..3334444459***************** PP

                 GRAS  92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          k+++++aN aIlea+  +     +  H+iDfdi+qG Q+++Ll+aL++R +g+p +++iT+v+++  ++ke+l+ +g+ L+++Ae++gv+
  Manes.06G151400.1.p 344 KLGFMAANLAILEATVDQpntssSGFHVIDFDIGQGCQYMNLLHALSERMNGKPsTVKITAVADNIGEEKERLKVVGSTLSQLAEQFGVS 433
                          **************988866555556************************887769********8877********************** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          ++fnv v+ ++ +l+ e+L ++p++ laVn++++l+r++desvs+e++rde+L+ vk+l P vv++veqe+++n+++F++r  e ++yy 
  Manes.06G151400.1.p 434 LRFNV-VSCKFGELSRESLGCDPEDPLAVNFAFNLYRMPDESVSTENPRDELLRRVKRLAPCVVTLVEQELNTNTAPFMARANEVISYYG 522
                          ****9.7999******************************************************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrvee 353
                          alf+s+e+++ re++er+kvE+  lgr++ n vaceg+er+er+e ++kWr+r+++aGF+  pls+k+++++k  l+  k  + g++v+e
  Manes.06G151400.1.p 523 ALFESIESTVQRENSERVKVEEG-LGRKLANSVACEGRERVERCEVFGKWRARMGMAGFELKPLSQKVTESMKGRLSSGKrvNPGFTVKE 611
                          ***********************.*************************************************99988776789****** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaW 373
                          e+g + +gW++++L+++SaW
  Manes.06G151400.1.p 612 EHGGVSFGWMGKTLTFASAW 631
                          ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.005234610IPR005202Transcription factor GRAS
PfamPF035146.3E-104261631IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAYGFSSGGS DFYTGIMGRS ITNMNSNNPS QPSYRTQLSQ VFLDPTSQIA QHQTSTTNFT  60
AQSVIGKRSL ADFQAHQQQL QQPNPNLNPA LNGLLRSVKP RMYQHTSPIS TLSPIELSVN  120
MASELPSLSR RYGMPLLQQL RPQPINLGPG PTIHSTNHAA SAVPHMNTLQ QQNRGVVIGG  180
HESKKKMMNR LQELEKELLD DNEDEEGDAV SVITNTNSEW SETIQNLITS STPNPISPSP  240
TSSSSSSSSS TSVTTPHNCS RQTLLDAASA IYEGKNDVAC EILTRVSQVL NPRVNSEHRL  300
MEYMLMALKS RVNPFENPPP VAELYSKEHV SSTQLLYELS PCFKLGFMAA NLAILEATVD  360
QPNTSSSGFH VIDFDIGQGC QYMNLLHALS ERMNGKPSTV KITAVADNIG EEKERLKVVG  420
STLSQLAEQF GVSLRFNVVS CKFGELSRES LGCDPEDPLA VNFAFNLYRM PDESVSTENP  480
RDELLRRVKR LAPCVVTLVE QELNTNTAPF MARANEVISY YGALFESIES TVQRENSERV  540
KVEEGLGRKL ANSVACEGRE RVERCEVFGK WRARMGMAGF ELKPLSQKVT ESMKGRLSSG  600
KRVNPGFTVK EEHGGVSFGW MGKTLTFASA WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3829563138374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G151400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615811.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2C9VSG80.0A0A2C9VSG8_MANES; Uncharacterized protein
STRINGcassava4.1_003853m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-164SCARECROW-like 8